Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JR901_RS08720 Genome accession   NZ_CP070906
Coordinates   1854912..1856339 (-) Length   475 a.a.
NCBI ID   WP_000980601.1    Uniprot ID   -
Organism   Escherichia coli strain 88COLEC     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1849912..1861339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR901_RS08690 (JR901_08690) yeeZ 1849967..1850791 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  JR901_RS08695 (JR901_08695) yeeY 1850837..1851766 (+) 930 WP_165473688.1 LysR family transcriptional regulator -
  JR901_RS08700 (JR901_08700) yoeI 1851981..1852043 (+) 63 WP_010723108.1 membrane protein YoeI -
  JR901_RS08705 (JR901_08705) plaP 1852033..1853391 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JR901_RS08710 (JR901_08710) tsuA 1853570..1854628 (+) 1059 WP_165473689.1 thiosulfate utilization transporter TsuA/YeeE -
  JR901_RS08715 (JR901_08715) tsuB 1854642..1854869 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JR901_RS08720 (JR901_08720) sbcB 1854912..1856339 (-) 1428 WP_000980601.1 exodeoxyribonuclease I Machinery gene
  JR901_RS08725 (JR901_08725) dacD 1856548..1857714 (+) 1167 WP_205899118.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JR901_RS08730 (JR901_08730) sbmC 1857833..1858306 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  JR901_RS08735 (JR901_08735) yeeA 1858504..1859562 (+) 1059 WP_001200891.1 FUSC family protein -
  JR901_RS08740 (JR901_08740) tmaR 1859734..1860063 (+) 330 WP_000450409.1 DUF496 family protein -
  JR901_RS08745 (JR901_08745) - 1860164..1860346 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JR901_RS08750 (JR901_08750) - 1860418..1860546 (+) 129 Protein_1726 transposase domain-containing protein -
  JR901_RS08755 (JR901_08755) - 1860835..1860915 (-) 81 Protein_1727 hypothetical protein -
  JR901_RS08760 (JR901_08760) yeeW 1860961..1861155 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54428.71 Da        Isoelectric Point: 5.4700

>NTDB_id=474880 JR901_RS08720 WP_000980601.1 1854912..1856339(-) (sbcB) [Escherichia coli strain 88COLEC]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=474880 JR901_RS08720 WP_000980601.1 1854912..1856339(-) (sbcB) [Escherichia coli strain 88COLEC]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583