Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   H7X60_RS08120 Genome accession   NZ_CP060266
Coordinates   1601720..1602646 (-) Length   308 a.a.
NCBI ID   WP_010921892.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SP1450     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596720..1607646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X60_RS09240 (H7X60_08060) - 1599604..1599687 (+) 84 Protein_1555 IS3 family transposase -
  H7X60_RS08110 (H7X60_08065) amiF 1599725..1600648 (-) 924 WP_002986000.1 ATP-binding cassette domain-containing protein Regulator
  H7X60_RS08115 (H7X60_08070) amiE 1600641..1601711 (-) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  H7X60_RS08120 (H7X60_08075) amiD 1601720..1602646 (-) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  H7X60_RS08125 (H7X60_08080) amiC 1602646..1604148 (-) 1503 WP_010921891.1 ABC transporter permease Regulator
  H7X60_RS08130 (H7X60_08085) amiA 1604213..1606183 (-) 1971 WP_011285389.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34896.82 Da        Isoelectric Point: 8.5670

>NTDB_id=474850 H7X60_RS08120 WP_010921892.1 1601720..1602646(-) (amiD) [Streptococcus pyogenes strain SP1450]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRFIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=474850 H7X60_RS08120 WP_010921892.1 1601720..1602646(-) (amiD) [Streptococcus pyogenes strain SP1450]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTAATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTTATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727