Detailed information NTG0474786

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JR895_RS05025
• Genome accession: NZ_CP070902
• Coordinates: 1043588..1044580 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 99COLEC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1038588..1049580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JR895_RS04995 (JR895_04995)	ispD	1038649..1039359 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JR895_RS05000 (JR895_05000)	ispF	1039359..1039838 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JR895_RS05005 (JR895_05005)	truD	1039835..1040884 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JR895_RS05010 (JR895_05010)	surE	1040865..1041626 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JR895_RS05015 (JR895_05015)	pcm	1041620..1042246 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JR895_RS05020 (JR895_05020)	nlpD	1042431..1043525 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JR895_RS05025 (JR895_05025)	rpoS	1043588..1044580 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JR895_RS05030 (JR895_05030)	ygbN	1044674..1046038 (-)	1365	WP_000104429.1	GntP family transporter	-
JR895_RS05035 (JR895_05035)	ygbM	1046127..1046903 (-)	777	WP_086585992.1	HPr family phosphocarrier protein	-
JR895_RS05040 (JR895_05040)	ygbL	1046908..1047546 (-)	639	WP_001278994.1	aldolase	-
JR895_RS05045 (JR895_05045)	otnK	1047543..1048805 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=474786 JR895_RS05025 WP_000081550.1 1043588..1044580(+) (rpoS) [Escherichia coli strain 99COLEC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=474786 JR895_RS05025 WP_000081550.1 1043588..1044580(+) (rpoS) [Escherichia coli strain 99COLEC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715