Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LJP_RS00040 | Genome accession | NC_017477 |
| Coordinates | 9216..9734 (+) | Length | 172 a.a. |
| NCBI ID | WP_012845405.1 | Uniprot ID | D0R2Q3 |
| Organism | Lactobacillus johnsonii DPC 6026 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4216..14734
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJP_RS00025 (LJP_0005) | gyrB | 4232..6199 (+) | 1968 | WP_004898283.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LJP_RS00030 (LJP_0006) | gyrA | 6210..8699 (+) | 2490 | WP_004898285.1 | DNA gyrase subunit A | - |
| LJP_RS00035 (LJP_0007) | rpsF | 8886..9182 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| LJP_RS00040 (LJP_0008) | ssb | 9216..9734 (+) | 519 | WP_012845405.1 | single-stranded DNA-binding protein | Machinery gene |
| LJP_RS00045 (LJP_0009) | rpsR | 9759..9995 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| LJP_RS00050 (LJP_0010) | - | 10089..11006 (+) | 918 | WP_014566898.1 | magnesium transporter CorA family protein | - |
| LJP_RS00055 (LJP_0011) | - | 11114..13132 (+) | 2019 | WP_014566899.1 | DHH family phosphoesterase | - |
| LJP_RS00060 (LJP_0012) | rplI | 13144..13599 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18570.30 Da Isoelectric Point: 4.7531
>NTDB_id=47476 LJP_RS00040 WP_012845405.1 9216..9734(+) (ssb) [Lactobacillus johnsonii DPC 6026]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQANGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQANGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=47476 LJP_RS00040 WP_012845405.1 9216..9734(+) (ssb) [Lactobacillus johnsonii DPC 6026]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGGCTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGGCTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |