Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HOO31_RS03585 Genome accession   NZ_CP060264
Coordinates   706538..708379 (-) Length   613 a.a.
NCBI ID   WP_186985079.1    Uniprot ID   -
Organism   Aliarcobacter cryaerophilus strain 16CS0369-1-AR-4     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701538..713379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO31_RS03570 (HOO31_03570) - 701996..703123 (+) 1128 WP_186985077.1 iron-containing alcohol dehydrogenase -
  HOO31_RS03575 (HOO31_03575) - 703159..705435 (-) 2277 WP_066405544.1 methyl-accepting chemotaxis protein -
  HOO31_RS03580 (HOO31_03580) - 705514..706545 (-) 1032 WP_186985078.1 alanine racemase -
  HOO31_RS03585 (HOO31_03585) uvrC 706538..708379 (-) 1842 WP_186985079.1 excinuclease ABC subunit UvrC Machinery gene
  HOO31_RS03590 (HOO31_03590) - 708500..710950 (+) 2451 WP_186985080.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71309.49 Da        Isoelectric Point: 9.1031

>NTDB_id=474744 HOO31_RS03585 WP_186985079.1 706538..708379(-) (uvrC) [Aliarcobacter cryaerophilus strain 16CS0369-1-AR-4]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITQEEYKKLLDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLATNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLQTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKSASLEELKAVLNEVDSKNIFDYFRKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=474744 HOO31_RS03585 WP_186985079.1 706538..708379(-) (uvrC) [Aliarcobacter cryaerophilus strain 16CS0369-1-AR-4]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACACCAAAACTACTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATAAAACAACTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACCTATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATTACAAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATACTCAAGTGGCGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCATTGGTACAAAAAAAATCTTGT
ATAAAAGGAAAGAGTGCTTGTCTATTTTACCAAATAGGAAAATGTAAAGCTCCTTGTGAGCAAAAAATAACACAAGAAGA
GTATAAAAAACTTTTAGATGAAGCCTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAGGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAGCAACAAATGAAGATTTGGATATATTTGCTATAAAATCTGCTAGTAAAAAAGCTGTAATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAGATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATATAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATCCCAAAAGAGATTATTGTAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAAATTGCATTAAACAACTGTGATGAACTTCTACGAATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGTCTACAAACAACTCCTAGCTTAATAGAAAGTTTTGACAATTCT
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGATAAAAAAGCTTTTAG
ACATTACAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTAGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCAATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGAAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCACATAGATTTGCTATAAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCCTTTTTA
CAAATAAATGGCATAGGTGAAGCAAAAATAAAAAAACTTCTTCTGTATTTTGGAGAGTTTGAAAAGATAAAAAGTGCAAG
TTTAGAAGAGTTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.51

97.227

0.501