Detailed information NTG0474716

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: JOW61_RS13355
• Genome accession: NZ_CP070844
• Coordinates: 2475037..2476164 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. natto strain BN0
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2470037..2481164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JOW61_RS13330	-	2470084..2470296 (-)	213	Protein_2578	recombinase family protein	-
JOW61_RS13335 (JOW61_13225)	fumC	2470515..2471903 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
JOW61_RS13340 (JOW61_13230)	-	2472070..2472960 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
JOW61_RS13345 (JOW61_13235)	-	2473902..2474297 (+)	396	WP_014480327.1	VOC family protein	-
JOW61_RS13355 (JOW61_13240)	rapC	2475037..2476164 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
JOW61_RS22460 (JOW61_13245)	-	2476346..2478272 (+)	1927	Protein_2583	T7SS effector LXG polymorphic toxin	-
JOW61_RS13370 (JOW61_13250)	-	2478286..2478573 (+)	288	WP_014480331.1	hypothetical protein	-
JOW61_RS13375 (JOW61_13255)	-	2478976..2479416 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
JOW61_RS13380 (JOW61_13260)	-	2479515..2479967 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
JOW61_RS13385 (JOW61_13265)	cdiI	2480064..2480423 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
JOW61_RS13390 (JOW61_13270)	-	2480495..2481007 (+)	513	WP_014477426.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=474716 JOW61_RS13355 WP_014480328.1 2475037..2476164(-) (rapC) [Bacillus subtilis subsp. natto strain BN0]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=474716 JOW61_RS13355 WP_014480328.1 2475037..2476164(-) (rapC) [Bacillus subtilis subsp. natto strain BN0]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397