Detailed information NTG0474579

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JW305_RS18365
• Genome accession: NZ_CP070593
• Coordinates: 3482863..3483855 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ESC53083
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3477863..3488855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW305_RS18345 (JW305_18345)	ygbM	3478501..3479277 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
JW305_RS18350 (JW305_18350)	ygbN	3479366..3480730 (+)	1365	WP_000104433.1	GntP family transporter	-
JW305_RS18355 (JW305_18355)	-	3480873..3481916 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
JW305_RS18360 (JW305_18360)	-	3482141..3482692 (+)	552	WP_001179444.1	flavodoxin family protein	-
JW305_RS18365 (JW305_18365)	rpoS	3482863..3483855 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JW305_RS18370 (JW305_18370)	nlpD	3483918..3485012 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
JW305_RS18375 (JW305_18375)	pcm	3485197..3485823 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JW305_RS18380 (JW305_18380)	surE	3485817..3486578 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JW305_RS18385 (JW305_18385)	truD	3486559..3487608 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
JW305_RS18390 (JW305_18390)	ispF	3487605..3488084 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JW305_RS18395 (JW305_18395)	ispD	3488084..3488794 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=474579 JW305_RS18365 WP_000081550.1 3482863..3483855(-) (rpoS) [Escherichia coli strain ESC53083]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=474579 JW305_RS18365 WP_000081550.1 3482863..3483855(-) (rpoS) [Escherichia coli strain ESC53083]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715