Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H7F27_RS20685 Genome accession   NZ_CP060193
Coordinates   4097291..4097581 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus sp. PAMC26543     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4092291..4102581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS20670 (H7F27_20670) - 4092485..4093708 (-) 1224 WP_260627369.1 G5 and 3D domain-containing protein -
  H7F27_RS20675 (H7F27_20675) - 4093954..4094721 (-) 768 WP_101860942.1 TatD family hydrolase -
  H7F27_RS20680 (H7F27_20680) metG 4094800..4096794 (-) 1995 WP_024123610.1 methionine--tRNA ligase -
  H7F27_RS20685 (H7F27_20685) abrB 4097291..4097581 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  H7F27_RS20690 (H7F27_20690) rsmI 4097631..4098509 (-) 879 WP_059334656.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H7F27_RS20695 (H7F27_20695) - 4098484..4098783 (-) 300 WP_010332689.1 GIY-YIG nuclease family protein -
  H7F27_RS20700 (H7F27_20700) - 4098770..4099513 (-) 744 WP_069487697.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H7F27_RS20705 (H7F27_20705) yabA 4099574..4099933 (-) 360 WP_010332687.1 replication initiation-control protein YabA -
  H7F27_RS20710 (H7F27_20710) ricT 4099948..4100775 (-) 828 WP_010332686.1 competence/sporulation regulator complex protein RicT -
  H7F27_RS20715 (H7F27_20715) holB 4100778..4101767 (-) 990 WP_095714727.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=474545 H7F27_RS20685 WP_003226760.1 4097291..4097581(+) (abrB) [Bacillus sp. PAMC26543]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=474545 H7F27_RS20685 WP_003226760.1 4097291..4097581(+) (abrB) [Bacillus sp. PAMC26543]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTGATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCTGGCGGCAAATTGGTACTAAGCAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1