Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H7F27_RS18990 Genome accession   NZ_CP060193
Coordinates   3771012..3771449 (+) Length   145 a.a.
NCBI ID   WP_024120178.1    Uniprot ID   -
Organism   Bacillus sp. PAMC26543     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3766012..3776449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS18970 (H7F27_18970) hxlR 3767201..3767563 (-) 363 WP_003241118.1 transcriptional activator HxlR -
  H7F27_RS18975 (H7F27_18975) hxlA 3767795..3768427 (+) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  H7F27_RS18980 (H7F27_18980) hxlB 3768433..3768990 (+) 558 WP_185848295.1 6-phospho-3-hexuloisomerase -
  H7F27_RS18985 (H7F27_18985) tlpC 3769103..3770827 (+) 1725 WP_185848296.1 methyl-accepting chemotaxis protein TlpC -
  H7F27_RS18990 (H7F27_18990) nucA/comI 3771012..3771449 (+) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  H7F27_RS18995 (H7F27_18995) nin/comJ 3771476..3771874 (+) 399 WP_024120177.1 competence protein ComJ Regulator
  H7F27_RS19000 (H7F27_19000) - 3771910..3773343 (-) 1434 WP_095714429.1 glycoside hydrolase family 1 protein -
  H7F27_RS19005 (H7F27_19005) - 3773416..3774144 (-) 729 WP_024120175.1 AAA family ATPase -
  H7F27_RS19010 (H7F27_19010) - 3774296..3774631 (-) 336 WP_185848297.1 YckD family protein -
  H7F27_RS19015 (H7F27_19015) - 3774713..3775168 (-) 456 WP_185848298.1 RDD family protein -
  H7F27_RS19020 (H7F27_19020) - 3775181..3776317 (-) 1137 WP_185848299.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.68 Da        Isoelectric Point: 4.1966

>NTDB_id=474540 H7F27_RS18990 WP_024120178.1 3771012..3771449(+) (nucA/comI) [Bacillus sp. PAMC26543]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=474540 H7F27_RS18990 WP_024120178.1 3771012..3771449(+) (nucA/comI) [Bacillus sp. PAMC26543]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGATGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917