Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   H7F27_RS15280 Genome accession   NZ_CP060193
Coordinates   3023569..3024147 (-) Length   192 a.a.
NCBI ID   WP_024120818.1    Uniprot ID   A0A7G7UAM4
Organism   Bacillus sp. PAMC26543     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3018569..3029147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS15245 (H7F27_15245) lepB 3018579..3019079 (-) 501 WP_105953786.1 signal peptidase I -
  H7F27_RS15250 (H7F27_15250) - 3019081..3019701 (-) 621 WP_024120823.1 TVP38/TMEM64 family protein -
  H7F27_RS15255 (H7F27_15255) - 3019857..3020219 (+) 363 WP_024120822.1 hypothetical protein -
  H7F27_RS15260 (H7F27_15260) - 3020445..3020645 (+) 201 WP_010333642.1 DUF3311 domain-containing protein -
  H7F27_RS15265 (H7F27_15265) - 3020642..3022111 (+) 1470 WP_185848116.1 sodium:solute symporter -
  H7F27_RS15270 (H7F27_15270) - 3022152..3022421 (-) 270 WP_010333640.1 excalibur calcium-binding domain-containing protein -
  H7F27_RS15275 (H7F27_15275) - 3022624..3023523 (+) 900 WP_101863809.1 SDR family oxidoreductase -
  H7F27_RS15280 (H7F27_15280) comK 3023569..3024147 (-) 579 WP_024120818.1 competence transcription factor ComK Regulator
  H7F27_RS15285 (H7F27_15285) - 3024440..3024673 (+) 234 WP_010333637.1 IDEAL domain-containing protein -
  H7F27_RS15290 (H7F27_15290) - 3024702..3025559 (-) 858 WP_059293097.1 SDR family oxidoreductase -
  H7F27_RS15295 (H7F27_15295) - 3025671..3027200 (+) 1530 WP_185848117.1 FAD-dependent oxidoreductase -
  H7F27_RS21155 - 3027458..3027835 (+) 378 Protein_3034 protoglobin domain-containing protein -
  H7F27_RS21160 - 3027845..3028639 (+) 795 WP_373271219.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22430.74 Da        Isoelectric Point: 7.6610

>NTDB_id=474530 H7F27_RS15280 WP_024120818.1 3023569..3024147(-) (comK) [Bacillus sp. PAMC26543]
MSQKTDAPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=474530 H7F27_RS15280 WP_024120818.1 3023569..3024147(-) (comK) [Bacillus sp. PAMC26543]
ATGAGTCAGAAAACTGACGCACCATTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCAAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAACGATGGAACTGC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.354

100

0.964