Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H7F27_RS13135 Genome accession   NZ_CP060193
Coordinates   2627889..2628167 (-) Length   92 a.a.
NCBI ID   WP_024121253.1    Uniprot ID   A0A9Q4EGS6
Organism   Bacillus sp. PAMC26543     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2622889..2633167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS13115 (H7F27_13115) ade 2622939..2624672 (-) 1734 WP_185847997.1 adenine deaminase -
  H7F27_RS13120 (H7F27_13120) ktrC 2624829..2625494 (-) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  H7F27_RS13125 (H7F27_13125) - 2625566..2626396 (-) 831 WP_185847998.1 gamma-glutamylcyclotransferase -
  H7F27_RS13130 (H7F27_13130) kinC 2626412..2627698 (-) 1287 WP_185847999.1 two-component sensor histidine kinase KinC -
  H7F27_RS13135 (H7F27_13135) abrB 2627889..2628167 (-) 279 WP_024121253.1 transcriptional regulator AbhA Regulator
  H7F27_RS13140 (H7F27_13140) mreBH 2628449..2629456 (+) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  H7F27_RS13145 (H7F27_13145) - 2629559..2629690 (+) 132 WP_024121251.1 protein YkpC -
  H7F27_RS13150 (H7F27_13150) - 2629804..2631036 (+) 1233 WP_185848000.1 aminopeptidase -
  H7F27_RS13155 (H7F27_13155) - 2631064..2631975 (-) 912 WP_024121249.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8872

>NTDB_id=474516 H7F27_RS13135 WP_024121253.1 2627889..2628167(-) (abrB) [Bacillus sp. PAMC26543]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGICLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=474516 H7F27_RS13135 WP_024121253.1 2627889..2628167(-) (abrB) [Bacillus sp. PAMC26543]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCATTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565