Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H7F27_RS08380 Genome accession   NZ_CP060193
Coordinates   1655979..1656746 (+) Length   255 a.a.
NCBI ID   WP_024122086.1    Uniprot ID   A0A9Q4HQQ6
Organism   Bacillus sp. PAMC26543     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1650979..1661746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS08350 (H7F27_08350) pgpH 1651278..1653413 (+) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -
  H7F27_RS08355 (H7F27_08355) ybeY 1653414..1653887 (+) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  H7F27_RS08360 (H7F27_08360) - 1653868..1654245 (+) 378 WP_024122089.1 diacylglycerol kinase family protein -
  H7F27_RS08365 (H7F27_08365) cdd 1654359..1654769 (+) 411 WP_024122088.1 cytidine deaminase -
  H7F27_RS08370 (H7F27_08370) era 1654750..1655655 (+) 906 WP_010334979.1 GTPase Era -
  H7F27_RS08375 (H7F27_08375) - 1655799..1655942 (+) 144 WP_024122087.1 YqzL family protein -
  H7F27_RS08380 (H7F27_08380) recO 1655979..1656746 (+) 768 WP_024122086.1 DNA repair protein RecO Machinery gene
  H7F27_RS08385 (H7F27_08385) glyQ 1657043..1657930 (+) 888 WP_103672297.1 glycine--tRNA ligase subunit alpha -
  H7F27_RS08390 (H7F27_08390) glyS 1657923..1659962 (+) 2040 WP_185848815.1 glycine--tRNA ligase subunit beta -
  H7F27_RS08395 (H7F27_08395) ccpN 1660096..1660734 (+) 639 WP_024122084.1 transcriptional regulator CcpN -
  H7F27_RS08400 (H7F27_08400) - 1660760..1661572 (+) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29333.03 Da        Isoelectric Point: 8.3105

>NTDB_id=474498 H7F27_RS08380 WP_024122086.1 1655979..1656746(+) (recO) [Bacillus sp. PAMC26543]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=474498 H7F27_RS08380 WP_024122086.1 1655979..1656746(+) (recO) [Bacillus sp. PAMC26543]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
GCCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.51

100

0.945