Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   H7F27_RS07135 Genome accession   NZ_CP060193
Coordinates   1438990..1439736 (+) Length   248 a.a.
NCBI ID   WP_185848751.1    Uniprot ID   A0A7G7UH22
Organism   Bacillus sp. PAMC26543     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433990..1444736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS07120 (H7F27_07120) - 1434215..1434406 (-) 192 WP_024122364.1 hypothetical protein -
  H7F27_RS07125 (H7F27_07125) valS 1434855..1437497 (+) 2643 WP_024122363.1 valine--tRNA ligase -
  H7F27_RS07130 (H7F27_07130) - 1437557..1438849 (+) 1293 WP_185848750.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  H7F27_RS07135 (H7F27_07135) comC 1438990..1439736 (+) 747 WP_185848751.1 A24 family peptidase Machinery gene
  H7F27_RS07140 (H7F27_07140) - 1439869..1440867 (+) 999 WP_024122359.1 SPOR domain-containing protein -
  H7F27_RS07145 (H7F27_07145) - 1441018..1441587 (+) 570 WP_185848752.1 Maf family nucleotide pyrophosphatase -
  H7F27_RS07150 (H7F27_07150) radC 1441625..1442320 (+) 696 WP_024122357.1 DNA repair protein RadC -
  H7F27_RS07155 (H7F27_07155) mreB 1442412..1443425 (+) 1014 WP_010335164.1 cell shape-determining protein MreB -
  H7F27_RS07160 (H7F27_07160) mreC 1443456..1444328 (+) 873 WP_024122356.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26543.06 Da        Isoelectric Point: 9.7865

>NTDB_id=474491 H7F27_RS07135 WP_185848751.1 1438990..1439736(+) (comC) [Bacillus sp. PAMC26543]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALVFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFAVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=474491 H7F27_RS07135 WP_185848751.1 1438990..1439736(+) (comC) [Bacillus sp. PAMC26543]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGGTGTTTCTATCTCTTCTAAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGCCGTTATTGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UH22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

80.242

100

0.802