Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H7F27_RS00195 Genome accession   NZ_CP060193
Coordinates   35928..37040 (-) Length   370 a.a.
NCBI ID   WP_024123582.1    Uniprot ID   -
Organism   Bacillus sp. PAMC26543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 12020..53019 35928..37040 within 0


Gene organization within MGE regions


Location: 12020..53019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS00085 (H7F27_00085) dnaX 12020..13714 (-) 1695 WP_024123597.1 DNA polymerase III subunit gamma/tau -
  H7F27_RS00095 (H7F27_00095) tadA 14190..14675 (-) 486 WP_024123596.1 tRNA adenosine(34) deaminase TadA -
  H7F27_RS00100 (H7F27_00100) - 14759..15310 (+) 552 WP_010332741.1 isochorismatase family cysteine hydrolase -
  H7F27_RS00105 (H7F27_00105) - 15373..16656 (+) 1284 WP_103672612.1 glycosyl hydrolase family 18 protein -
  H7F27_RS00110 (H7F27_00110) dgk 16755..17378 (+) 624 WP_105955735.1 deoxyguanosine kinase -
  H7F27_RS00115 (H7F27_00115) dck 17375..18028 (+) 654 WP_024123592.1 deoxyadenosine/deoxycytidine kinase -
  H7F27_RS00125 (H7F27_00125) serS 18368..19645 (-) 1278 WP_024123591.1 serine--tRNA ligase -
  H7F27_RS00130 (H7F27_00130) pdxT 19977..20567 (-) 591 WP_024123590.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  H7F27_RS00135 (H7F27_00135) pdxS 20588..21472 (-) 885 WP_024123589.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  H7F27_RS00140 (H7F27_00140) dacA 21668..22999 (-) 1332 WP_024123588.1 D-alanyl-D-alanine carboxypeptidase -
  H7F27_RS00145 (H7F27_00145) guaB 23154..24620 (-) 1467 WP_024123587.1 IMP dehydrogenase -
  H7F27_RS00150 (H7F27_00150) - 24741..25691 (+) 951 WP_185848919.1 YaaC family protein -
  H7F27_RS00180 (H7F27_00180) gyrA 31009..33480 (-) 2472 WP_024123585.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  H7F27_RS00185 (H7F27_00185) gyrB 33692..35609 (-) 1918 Protein_24 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  H7F27_RS00190 (H7F27_00190) remB 35665..35910 (-) 246 WP_024123583.1 extracellular matrix regulator RemB -
  H7F27_RS00195 (H7F27_00195) recF 35928..37040 (-) 1113 WP_024123582.1 DNA replication/repair protein RecF Machinery gene
  H7F27_RS00200 (H7F27_00200) rlbA 37056..37271 (-) 216 WP_003219264.1 ribosome maturation protein RlbA -
  H7F27_RS00205 (H7F27_00205) dnaN 37403..38539 (-) 1137 WP_024123581.1 DNA polymerase III subunit beta -
  H7F27_RS00210 (H7F27_00210) dnaA 38731..40071 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  H7F27_RS00215 (H7F27_00215) rpmH 40704..40838 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  H7F27_RS00220 (H7F27_00220) rnpA 40987..41340 (+) 354 WP_024123579.1 ribonuclease P protein component -
  H7F27_RS00225 (H7F27_00225) spoIIIJ 41482..42267 (+) 786 WP_081638392.1 YidC family membrane integrase SpoIIIJ -
  H7F27_RS00230 (H7F27_00230) jag 42264..42890 (+) 627 WP_024123578.1 RNA-binding cell elongation regulator Jag/EloR -
  H7F27_RS00235 (H7F27_00235) mnmE 43206..44585 (+) 1380 WP_024123577.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  H7F27_RS00240 (H7F27_00240) mnmG 44606..46492 (+) 1887 WP_101859620.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  H7F27_RS00245 (H7F27_00245) rsmG 46506..47225 (+) 720 WP_024123575.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  H7F27_RS00250 (H7F27_00250) noc 47347..48198 (+) 852 WP_003219249.1 nucleoid occlusion protein -
  H7F27_RS00255 (H7F27_00255) - 48243..48683 (-) 441 WP_185848364.1 PH domain-containing protein -
  H7F27_RS00260 (H7F27_00260) soj 48933..49694 (+) 762 WP_010332665.1 sporulation initiation inhibitor protein Soj -
  H7F27_RS00265 (H7F27_00265) spo0J 49687..50535 (+) 849 WP_024123572.1 stage 0 sporulation protein Spo0J -
  H7F27_RS00270 (H7F27_00270) yyaC 50575..51192 (-) 618 WP_024123571.1 spore protease YyaC -
  H7F27_RS00275 (H7F27_00275) - 51703..52719 (+) 1017 WP_049809975.1 hypothetical protein -
  H7F27_RS00280 (H7F27_00280) - 52813..53019 (+) 207 WP_185848365.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42434.44 Da        Isoelectric Point: 7.0882

>NTDB_id=474468 H7F27_RS00195 WP_024123582.1 35928..37040(-) (recF) [Bacillus sp. PAMC26543]
MYIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=474468 H7F27_RS00195 WP_024123582.1 35928..37040(-) (recF) [Bacillus sp. PAMC26543]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTATGAACATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCTCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCAAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCAATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAGCTCAGCCAGTA
TGTCGGCGCCCTCAACACCATCATGTTTGCACCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGAT
TTCTTGACATGGAAATCGGCCAAGTTTCTCCTGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAGTTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAATTGACGCTGAAGTACCATACGGCGCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGGTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAGCTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGGCAAGCAGGTATGTTCCGTGTGCAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.108

100

0.981