Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H7F26_RS19980 Genome accession   NZ_CP060192
Coordinates   3861780..3862409 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus sp. PAMC28748     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3856780..3867409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F26_RS19955 (H7F26_19955) rpsT 3856994..3857260 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  H7F26_RS19960 (H7F26_19960) holA 3857322..3858365 (-) 1044 WP_009327866.1 DNA polymerase III subunit delta -
  H7F26_RS19965 (H7F26_19965) - 3858595..3858726 (+) 132 WP_003183686.1 YqzM family protein -
  H7F26_RS19970 (H7F26_19970) - 3858751..3861138 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  H7F26_RS19975 (H7F26_19975) - 3861142..3861711 (-) 570 WP_003183690.1 ComE operon protein 2 -
  H7F26_RS19980 (H7F26_19980) comEA 3861780..3862409 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  H7F26_RS19985 (H7F26_19985) comER 3862493..3863314 (+) 822 WP_003183696.1 late competence protein ComER -
  H7F26_RS19990 (H7F26_19990) - 3863384..3864139 (-) 756 WP_003183697.1 class I SAM-dependent methyltransferase -
  H7F26_RS19995 (H7F26_19995) rsfS 3864136..3864492 (-) 357 WP_003183699.1 ribosome silencing factor -
  H7F26_RS20000 (H7F26_20000) yqeK 3864506..3865069 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  H7F26_RS20005 (H7F26_20005) - 3865059..3865628 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  H7F26_RS20010 (H7F26_20010) yhbY 3865647..3865937 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  H7F26_RS20015 (H7F26_20015) aroE 3865931..3866767 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=474460 H7F26_RS19980 WP_003183693.1 3861780..3862409(-) (comEA) [Bacillus sp. PAMC28748]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=474460 H7F26_RS19980 WP_003183693.1 3861780..3862409(-) (comEA) [Bacillus sp. PAMC28748]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526