Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H7F26_RS06200 Genome accession   NZ_CP060192
Coordinates   1225595..1226707 (+) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus sp. PAMC28748     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1220595..1231707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F26_RS06175 (H7F26_06175) rnpA 1221324..1221683 (-) 360 WP_003178055.1 ribonuclease P protein component -
  H7F26_RS06180 (H7F26_06180) rpmH 1221768..1221902 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  H7F26_RS06185 (H7F26_06185) dnaA 1222542..1223882 (+) 1341 WP_003178077.1 chromosomal replication initiator protein DnaA -
  H7F26_RS06190 (H7F26_06190) dnaN 1224059..1225195 (+) 1137 WP_003178080.1 DNA polymerase III subunit beta -
  H7F26_RS06195 (H7F26_06195) yaaA 1225363..1225578 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  H7F26_RS06200 (H7F26_06200) recF 1225595..1226707 (+) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  H7F26_RS06205 (H7F26_06205) remB 1226725..1226967 (+) 243 WP_003178090.1 extracellular matrix regulator RemB -
  H7F26_RS06210 (H7F26_06210) gyrB 1227027..1228940 (+) 1914 WP_009330043.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  H7F26_RS06215 (H7F26_06215) gyrA 1229131..1231599 (+) 2469 WP_003178095.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=474413 H7F26_RS06200 WP_003178089.1 1225595..1226707(+) (recF) [Bacillus sp. PAMC28748]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=474413 H7F26_RS06200 WP_003178089.1 1225595..1226707(+) (recF) [Bacillus sp. PAMC28748]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886