Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H7F25_RS17870 Genome accession   NZ_CP060191
Coordinates   3536815..3537105 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. PAMC28571     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3531815..3542105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS17830 (H7F25_17830) - 3531847..3532176 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  H7F25_RS17835 (H7F25_17835) - 3532189..3532629 (+) 441 WP_024425626.1 YaaR family protein -
  H7F25_RS17840 (H7F25_17840) holB 3532641..3533630 (+) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  H7F25_RS17845 (H7F25_17845) - 3533633..3534460 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  H7F25_RS17850 (H7F25_17850) yabA 3534475..3534828 (+) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  H7F25_RS17855 (H7F25_17855) - 3534884..3535627 (+) 744 WP_024425630.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H7F25_RS17860 (H7F25_17860) - 3535614..3535913 (+) 300 WP_024425631.1 GIY-YIG nuclease family protein -
  H7F25_RS17865 (H7F25_17865) rsmI 3535888..3536769 (+) 882 WP_185854028.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H7F25_RS17870 (H7F25_17870) abrB 3536815..3537105 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H7F25_RS17875 (H7F25_17875) metG 3537626..3539626 (+) 2001 WP_185854029.1 methionine--tRNA ligase -
  H7F25_RS17880 (H7F25_17880) - 3539708..3540475 (+) 768 WP_024425634.1 TatD family hydrolase -
  H7F25_RS17885 (H7F25_17885) - 3540720..3541922 (+) 1203 WP_044334281.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=474391 H7F25_RS17870 WP_087975202.1 3536815..3537105(-) (abrB) [Bacillus sp. PAMC28571]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=474391 H7F25_RS17870 WP_087975202.1 3536815..3537105(-) (abrB) [Bacillus sp. PAMC28571]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGCGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938