Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H7F25_RS17525 Genome accession   NZ_CP060191
Coordinates   3472253..3472795 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus sp. PAMC28571     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3467253..3477795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS17500 (H7F25_17500) - 3467526..3468134 (-) 609 WP_034622294.1 alpha/beta hydrolase -
  H7F25_RS17505 (H7F25_17505) - 3468131..3469102 (-) 972 WP_034667828.1 ring-cleaving dioxygenase -
  H7F25_RS17510 (H7F25_17510) opuFB 3469294..3470811 (-) 1518 WP_185854020.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  H7F25_RS17515 (H7F25_17515) - 3470804..3471769 (-) 966 WP_185854021.1 ABC transporter ATP-binding protein -
  H7F25_RS17520 (H7F25_17520) rpsR 3471972..3472211 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  H7F25_RS17525 (H7F25_17525) ssbA 3472253..3472795 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  H7F25_RS17530 (H7F25_17530) rpsF 3472832..3473119 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  H7F25_RS17535 (H7F25_17535) ychF 3473228..3474328 (-) 1101 WP_185854022.1 redox-regulated ATPase YchF -
  H7F25_RS17540 (H7F25_17540) - 3474545..3474751 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  H7F25_RS17545 (H7F25_17545) - 3475047..3476366 (+) 1320 WP_185854023.1 hydrolase -
  H7F25_RS17550 (H7F25_17550) - 3476382..3476792 (+) 411 WP_024424061.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=474388 H7F25_RS17525 WP_007497456.1 3472253..3472795(-) (ssbA) [Bacillus sp. PAMC28571]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=474388 H7F25_RS17525 WP_007497456.1 3472253..3472795(-) (ssbA) [Bacillus sp. PAMC28571]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAACAGCTTTAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361