Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7F25_RS08880 Genome accession   NZ_CP060191
Coordinates   1800462..1801097 (+) Length   211 a.a.
NCBI ID   WP_024428112.1    Uniprot ID   A0A5C0WK87
Organism   Bacillus sp. PAMC28571     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795462..1806097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS08840 (H7F25_08840) - 1795616..1796734 (+) 1119 WP_024428115.1 NADH-dependent flavin oxidoreductase -
  H7F25_RS08845 (H7F25_08845) - 1796788..1797294 (-) 507 WP_024422767.1 PTS glucose transporter subunit IIA -
  H7F25_RS08850 (H7F25_08850) - 1797464..1797883 (+) 420 WP_171464477.1 Hsp20/alpha crystallin family protein -
  H7F25_RS08855 (H7F25_08855) - 1797903..1798361 (-) 459 WP_225315529.1 YppG family protein -
  H7F25_RS08860 (H7F25_08860) - 1798470..1798850 (-) 381 WP_224426683.1 YppE family protein -
  H7F25_RS08865 (H7F25_08865) - 1798900..1799133 (-) 234 WP_225315530.1 DUF5446 family protein -
  H7F25_RS08870 (H7F25_08870) sspM 1799331..1799435 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  H7F25_RS08875 (H7F25_08875) - 1799459..1800415 (-) 957 WP_151039999.1 DUF2515 domain-containing protein -
  H7F25_RS08880 (H7F25_08880) recU 1800462..1801097 (+) 636 WP_024428112.1 Holliday junction resolvase RecU Machinery gene
  H7F25_RS08885 (H7F25_08885) - 1801117..1803831 (+) 2715 WP_133744138.1 PBP1A family penicillin-binding protein -
  H7F25_RS08890 (H7F25_08890) - 1803867..1804376 (-) 510 WP_024428110.1 YpoC family protein -
  H7F25_RS08895 (H7F25_08895) nth 1804373..1805035 (-) 663 WP_122631032.1 endonuclease III -
  H7F25_RS08900 (H7F25_08900) - 1805053..1805757 (-) 705 WP_024422777.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24317.64 Da        Isoelectric Point: 9.7224

>NTDB_id=474359 H7F25_RS08880 WP_024428112.1 1800462..1801097(+) (recU) [Bacillus sp. PAMC28571]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFYFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESNQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=474359 H7F25_RS08880 WP_024428112.1 1800462..1801097(+) (recU) [Bacillus sp. PAMC28571]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTACCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTATAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTACTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAATCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WK87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.762

95.735

0.706