Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H7F25_RS06645 Genome accession   NZ_CP060191
Coordinates   1344133..1345035 (+) Length   300 a.a.
NCBI ID   WP_103132421.1    Uniprot ID   -
Organism   Bacillus sp. PAMC28571     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1339133..1350035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS06625 (H7F25_06625) - 1339796..1341535 (+) 1740 WP_185854402.1 glycosyltransferase -
  H7F25_RS06630 (H7F25_06630) - 1341532..1341807 (+) 276 WP_149126667.1 FlhB-like flagellar biosynthesis protein -
  H7F25_RS06635 (H7F25_06635) sucC 1341984..1343144 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  H7F25_RS06640 (H7F25_06640) sucD 1343167..1344069 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  H7F25_RS06645 (H7F25_06645) dprA 1344133..1345035 (+) 903 WP_103132421.1 DNA-processing protein DprA Machinery gene
  H7F25_RS06650 (H7F25_06650) topA 1345229..1347304 (+) 2076 WP_024424184.1 type I DNA topoisomerase -
  H7F25_RS06655 (H7F25_06655) trmFO 1347375..1348679 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H7F25_RS06660 (H7F25_06660) xerC 1348742..1349659 (+) 918 WP_103132420.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34100.50 Da        Isoelectric Point: 8.8788

>NTDB_id=474354 H7F25_RS06645 WP_103132421.1 1344133..1345035(+) (dprA) [Bacillus sp. PAMC28571]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLTQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRIPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=474354 H7F25_RS06645 WP_103132421.1 1344133..1345035(+) (dprA) [Bacillus sp. PAMC28571]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACATATCGTTCAAGCCTATTTAACGCAAAACATTCACATG
ATTCCCATTACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAATTCCCTCATCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATGTATACCCAAAAGAGCATGT
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCGGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387