Detailed information NTG0474270

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JT749_RS25515
• Genome accession: NZ_CP070467
• Coordinates: 5578877..5579881 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain B17416
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5573877..5584881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JT749_RS25500 (JT749_25500)	-	5574360..5575367 (+)	1008	WP_003098486.1	TolB family protein	-
JT749_RS25505 (JT749_25505)	mutS	5575493..5578060 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JT749_RS25510 (JT749_25510)	fdxA	5578127..5578450 (+)	324	WP_003092272.1	ferredoxin FdxA	-
JT749_RS25515 (JT749_25515)	rpoS	5578877..5579881 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JT749_RS25520 (JT749_25520)	-	5579986..5580879 (-)	894	WP_033991080.1	peptidoglycan DD-metalloendopeptidase family protein	-
JT749_RS25525 (JT749_25525)	-	5580925..5581560 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JT749_RS25530 (JT749_25530)	surE	5581593..5582342 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JT749_RS25535 (JT749_25535)	truD	5582330..5583397 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
JT749_RS25540 (JT749_25540)	ispF	5583394..5583867 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JT749_RS25545 (JT749_25545)	fghA	5583938..5584789 (-)	852	WP_003092349.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=474270 JT749_RS25515 WP_003113871.1 5578877..5579881(-) (rpoS) [Pseudomonas aeruginosa strain B17416]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=474270 JT749_RS25515 WP_003113871.1 5578877..5579881(-) (rpoS) [Pseudomonas aeruginosa strain B17416]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653