Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   JRY11_RS09890 Genome accession   NZ_CP070382
Coordinates   1903883..1904938 (+) Length   351 a.a.
NCBI ID   WP_025017072.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898883..1909938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS09875 (JRY11_001986) - 1900338..1902017 (+) 1680 WP_248554244.1 FAD-dependent oxidoreductase -
  JRY11_RS09880 (JRY11_001987) arsB 1902014..1903066 (+) 1053 WP_023189251.1 ACR3 family arsenite efflux transporter -
  JRY11_RS09885 (JRY11_001988) - 1903075..1903278 (+) 204 WP_023189252.1 hypothetical protein -
  JRY11_RS09890 (JRY11_001989) xerS 1903883..1904938 (+) 1056 WP_025017072.1 tyrosine recombinase XerS Machinery gene
  JRY11_RS09895 (JRY11_001990) - 1905022..1905312 (+) 291 WP_044009676.1 hypothetical protein -
  JRY11_RS09900 (JRY11_001991) xerS 1905791..1906861 (+) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  JRY11_RS09905 (JRY11_001992) trmFO 1906906..1908249 (-) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40643.43 Da        Isoelectric Point: 9.7797

>NTDB_id=474175 JRY11_RS09890 WP_025017072.1 1903883..1904938(+) (xerS) [Lactococcus lactis strain KF140]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDSNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEAKLF
LGDETKAFLKYVEHDYEKSISNRARTSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVP
IAHFSHKYITDYFESRSSLNTDVEALFITDYNQTIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALKKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=474175 JRY11_RS09890 WP_025017072.1 1903883..1904938(+) (xerS) [Lactococcus lactis strain KF140]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTGCCACTGAGTATTGCCTCTATTTACTCTTACTGCTTAGAATTTAGAAAATACTTGAAATGGATGA
ATGAAAATAATATAACGAACCATGCTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCATTAAATCGAAC
AATTGCTGCAATAAAGAGCCTATATAATTATCTTTGCGAACAAACCGAAGATAGTAATGGCAATACTTACATGACTAGAA
ATGTTAGCCGGTTAATTCATATCCGAAAAAAAAGCGAAACCTTGCATTACCGTGCAGCTCAACTGGAAGCTAAACTATTT
TTAGGAGACGAAACTAAAGCATTTTTAAAGTATGTTGAACATGACTATGAAAAGTCTATCAGTAATCGTGCAAGAACAAG
TTTTAAGAAAAATAAAGTCAGGGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGATTACGTTGTGCGGAACTTGTAG
GAATCAATCTTAACGATTTAAACCTTGAAACTGGAAAAGTAAGAGTGATGCGCAAAGAAGGCAAGAAGGATGTAGTGCCT
ATTGCTCATTTTTCGCATAAATATATAACAGATTATTTTGAGTCAAGAAGTAGCTTAAATACTGATGTAGAAGCCTTATT
TATCACGGACTATAATCAAACAATTAGAAAAATTTCTAACGCATCGATAAATAAGCTAGTCGCAAAGTATTCAGAAGCCT
ATAAAGTTAGAGTAACCCCTCATACTCTAAGGCATACATTCGCAACAAGACTCTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAATCAATTAGGGCACTCTTCAACCAAACCAACTGAGTTGTATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
GTTAAAAAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(172-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.714

99.715

0.456