Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H6X75_RS09430 Genome accession   NZ_CP060156
Coordinates   1873087..1874118 (-) Length   343 a.a.
NCBI ID   WP_000506432.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700608     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868087..1879118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6X75_RS09380 (H6X75_09385) - 1868230..1868991 (-) 762 WP_001107758.1 SDR family NAD(P)-dependent oxidoreductase -
  H6X75_RS09385 (H6X75_09390) ytpR 1869024..1869653 (-) 630 WP_000578314.1 YtpR family tRNA-binding protein -
  H6X75_RS09390 (H6X75_09395) - 1869669..1869986 (-) 318 WP_000615767.1 thioredoxin family protein -
  H6X75_RS09395 (H6X75_09400) - 1869983..1870282 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  H6X75_RS09400 - 1870480..1870560 (-) 81 WP_223716573.1 hypothetical protein -
  H6X75_RS09405 (H6X75_09405) - 1870567..1870758 (-) 192 WP_000291826.1 cell wall-binding protein -
  H6X75_RS09410 (H6X75_09410) - 1870919..1871593 (-) 675 WP_000725744.1 hypothetical protein -
  H6X75_RS09415 (H6X75_09415) - 1871599..1872045 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  H6X75_RS09420 (H6X75_09420) - 1872159..1872662 (-) 504 WP_000800944.1 phosphatase PAP2 family protein -
  H6X75_RS09425 (H6X75_09425) - 1872659..1873021 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  H6X75_RS09430 rcrQ 1873087..1874118 (-) 1032 WP_000506432.1 ATP-binding cassette domain-containing protein Regulator
  H6X75_RS09435 rcrP 1874125..1874946 (-) 822 WP_001820424.1 ABC transporter permease Regulator
  H6X75_RS09440 (H6X75_09435) - 1874962..1875432 (-) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  H6X75_RS09445 (H6X75_09440) - 1875638..1876894 (+) 1257 WP_000436237.1 ISL3-like element IS1167A family transposase -
  H6X75_RS09450 (H6X75_09445) - 1876979..1877695 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38026.30 Da        Isoelectric Point: 4.5159

>NTDB_id=474173 H6X75_RS09430 WP_000506432.1 1873087..1874118(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700608]
MGFLLMGALFIVLPRTMVSAKRINQVLYLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTFFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=474173 H6X75_RS09430 WP_000506432.1 1873087..1874118(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700608]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
ATATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATTCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.861

100

0.382