Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H6X75_RS09435 Genome accession   NZ_CP060156
Coordinates   1874125..1874946 (-) Length   273 a.a.
NCBI ID   WP_001820424.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700608     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1875638..1882064 1874125..1874946 flank 692


Gene organization within MGE regions


Location: 1874125..1882064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6X75_RS09435 rcrP 1874125..1874946 (-) 822 WP_001820424.1 ABC transporter permease Regulator
  H6X75_RS09440 (H6X75_09435) - 1874962..1875432 (-) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  H6X75_RS09445 (H6X75_09440) - 1875638..1876894 (+) 1257 WP_000436237.1 ISL3-like element IS1167A family transposase -
  H6X75_RS09450 (H6X75_09445) - 1876979..1877695 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  H6X75_RS09455 (H6X75_09450) ply 1878578..1879993 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  H6X75_RS09460 (H6X75_09455) - 1880004..1880414 (-) 411 WP_000595758.1 hypothetical protein -
  H6X75_RS09465 (H6X75_09460) - 1880407..1881015 (-) 609 WP_000083614.1 hypothetical protein -
  H6X75_RS09470 (H6X75_09465) - 1881028..1881486 (-) 459 WP_000186955.1 DUF4231 domain-containing protein -
  H6X75_RS09475 (H6X75_09470) - 1881611..1882064 (+) 454 Protein_1867 transposase family protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30473.10 Da        Isoelectric Point: 5.9135

>NTDB_id=474174 H6X75_RS09435 WP_001820424.1 1874125..1874946(-) (rcrP) [Streptococcus pneumoniae strain PZ900700608]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=474174 H6X75_RS09435 WP_001820424.1 1874125..1874946(-) (rcrP) [Streptococcus pneumoniae strain PZ900700608]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.544

100

0.601