Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LAB52_RS08650 Genome accession   NC_017470
Coordinates   1717582..1719378 (+) Length   598 a.a.
NCBI ID   WP_014566186.1    Uniprot ID   -
Organism   Lactobacillus amylovorus GRL1118     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712582..1724378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAB52_RS08625 (LAB52_08775) - 1712830..1714371 (-) 1542 WP_014566182.1 ABC-F family ATP-binding cassette domain-containing protein -
  LAB52_RS08630 (LAB52_08780) - 1714380..1714772 (-) 393 WP_041810426.1 hypothetical protein -
  LAB52_RS08635 (LAB52_08785) - 1714879..1715457 (+) 579 WP_013438640.1 GNAT family protein -
  LAB52_RS08640 (LAB52_08790) - 1715432..1716121 (-) 690 WP_014566184.1 DUF554 domain-containing protein -
  LAB52_RS08645 (LAB52_08795) - 1716188..1717420 (-) 1233 WP_014566185.1 LCP family protein -
  LAB52_RS08650 (LAB52_08800) pepF 1717582..1719378 (+) 1797 WP_014566186.1 oligoendopeptidase F Regulator
  LAB52_RS08655 (LAB52_08805) - 1719432..1719764 (-) 333 WP_013438644.1 ATP-binding protein -
  LAB52_RS08660 (LAB52_08810) - 1719930..1720730 (-) 801 WP_013438645.1 CPBP family intramembrane glutamic endopeptidase -
  LAB52_RS08665 (LAB52_08815) - 1720834..1722348 (-) 1515 WP_013438646.1 L-lactate permease -
  LAB52_RS08670 (LAB52_08820) - 1722701..1723066 (+) 366 WP_013438647.1 pyridoxamine 5'-phosphate oxidase family protein -
  LAB52_RS10905 - 1723136..1723795 (-) 660 Protein_1683 DUF4767 domain-containing protein -
  LAB52_RS08680 (LAB52_08835) - 1723797..1724090 (-) 294 WP_013642475.1 hypothetical protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68220.12 Da        Isoelectric Point: 4.6832

>NTDB_id=47415 LAB52_RS08650 WP_014566186.1 1717582..1719378(+) (pepF) [Lactobacillus amylovorus GRL1118]
MAIPTRNEVPENLKWDLTRIFKTDEDWEAAFDKAKDDVEKLGALKGTLTKSGKDLYEGLTKILAVKRDVENIYVYATMSS
DVDTSNSHYLGYVSRVQTLANQFEAVTSFISPEILSIPADKFEQFKKDEPRLKNYAHYLETITNKRPHTLPAEEEKIIAD
ASDAMGVSENTFNVLTNSDMEYGYVQDDEGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYGQFQNSLASTLSGVVKK
HNYNAKVHKYDSAREAALSENNVPTKVYDTLIQEVDSHLDLLHRYVALRKKILRLKDLQMWDMYVPLTGKPALSYNFEEA
KEVAKKALAPLGEDYLKHVDYIFNNRVIDVVESKNKVTGAYSGGAYDTDPYELLNWEDNVDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFIHEADAKGEPLTA
DTLDDVYGQLNQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTDADRDAYLGFLKAGSSDY
PTEIMKHAGVDMTKPDYLEDAFKTFEKRLNEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=47415 LAB52_RS08650 WP_014566186.1 1717582..1719378(+) (pepF) [Lactobacillus amylovorus GRL1118]
ATGGCAATTCCAACAAGAAATGAAGTCCCTGAAAATTTGAAATGGGACTTAACCAGAATTTTTAAGACAGATGAAGACTG
GGAAGCAGCTTTTGACAAAGCAAAAGACGATGTTGAAAAGCTGGGAGCATTGAAAGGTACTTTGACTAAGTCTGGTAAAG
ATTTGTACGAAGGCTTAACCAAGATCTTGGCAGTTAAACGCGATGTCGAAAACATCTACGTTTATGCCACTATGTCTAGT
GACGTTGATACTTCTAACTCACACTATTTAGGCTACGTTAGCCGCGTGCAAACTTTGGCTAACCAATTCGAAGCTGTCAC
TAGTTTTATTAGCCCTGAGATCTTGAGCATCCCTGCCGACAAATTTGAGCAATTCAAGAAGGACGAACCTCGTTTAAAGA
ATTATGCTCACTACCTTGAAACGATCACTAACAAGCGTCCCCACACTTTGCCAGCCGAAGAAGAAAAGATCATCGCTGAC
GCTAGCGACGCAATGGGCGTTTCAGAGAACACCTTCAACGTTTTAACCAACTCCGACATGGAATACGGCTACGTTCAAGA
CGACGAAGGCAATATGGAACAATTGTCAGACGGTTTGTACTCACTTTTGATCCAATCACAAAACCGTGATGTTAGAAAAG
GCGCTTTTGACACGCTTTACGCTACTTATGGTCAATTCCAAAACTCACTTGCTTCTACCCTTTCCGGCGTTGTAAAGAAG
CACAACTATAACGCTAAGGTGCACAAGTATGACTCAGCTCGCGAAGCCGCATTGTCTGAAAACAACGTACCTACCAAGGT
TTACGACACTTTGATCCAAGAAGTTGATTCACACCTTGATTTACTCCACCGTTATGTTGCGCTACGTAAGAAGATTTTAA
GACTCAAAGATTTACAAATGTGGGACATGTATGTGCCACTAACTGGTAAACCTGCTCTTTCCTATAACTTCGAAGAAGCA
AAAGAAGTTGCTAAGAAGGCACTCGCTCCACTTGGTGAAGACTACTTGAAGCACGTCGATTACATTTTTAACAACCGCGT
CATCGACGTTGTGGAATCAAAGAACAAGGTCACTGGTGCCTACTCTGGTGGTGCCTACGATACTGATCCATATGAACTTT
TGAACTGGGAAGACAACGTTGATTCACTTTACACATTAGTGCACGAAACTGGTCACTCAGTTCACTCTTGGTACACTCGT
AACACCCAACCTTACGTTTATGGTGACTACCCAATTTTCGTAGCTGAAATTGCTTCAACCACTAACGAAAACATTTTGAC
TGAATACTTCTTGGACCACATCACTGATCCTAAGACGCGTGCCTTTATCTTGAACTACTACCTTGATTCATTTAAGGGTA
CTTTGTTCCGTCAAACTCAATTTGCCGTATTTGAACAATTTATCCATGAAGCTGACGCTAAGGGTGAACCACTTACTGCC
GACACTTTGGATGACGTTTATGGTCAACTTAACCAACACTACTACGGTGATAGCGTTGAACCAGGCGGCGACATTGCACT
TGAATGGTCACGTATTCCACACTTCTACTACAACTTCTACGTTTACCAATATGCGACTGGTTTTGCGGCTGCGACTGCAC
TTGCTAACAAGGTTGTTCATGGTACTGACGCTGATAGGGATGCATATCTTGGCTTCCTTAAGGCTGGTTCAAGTGATTAT
CCAACTGAAATCATGAAGCATGCTGGCGTTGACATGACTAAGCCAGACTACTTGGAAGATGCCTTCAAGACTTTTGAAAA
GCGTTTGAACGAATTTGAAAGCTTGATTGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.02

99.331

0.517

Multiple sequence alignment