Detailed information NTG0474121

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: BDGGKGIB_RS17505
• Genome accession: NZ_CP060140
• Coordinates: 4248396..4249502 (-)
• Length: 368 a.a.
• NCBI ID: WP_239728239.1
• Uniprot ID: -
• Organism: Nodularia sphaerocarpa UHCC 0038
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4243396..4254502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BDGGKGIB_RS17485 (BDGGKGIB_03535)	-	4243501..4243803 (-)	303	WP_006195344.1	HU family DNA-binding protein	-
BDGGKGIB_RS17490 (BDGGKGIB_03536)	-	4244284..4246767 (-)	2484	WP_239728235.1	type IV pilus secretin family protein	-
BDGGKGIB_RS17495 (BDGGKGIB_03537)	-	4246845..4247624 (-)	780	WP_239728237.1	pilus assembly protein PilO	-
BDGGKGIB_RS17500 (BDGGKGIB_03538)	-	4247621..4248391 (-)	771	WP_239728238.1	PilN domain-containing protein	-
BDGGKGIB_RS17505 (BDGGKGIB_03539)	pilM	4248396..4249502 (-)	1107	WP_239728239.1	type IV pilus assembly protein PilM	Machinery gene
BDGGKGIB_RS17510 (BDGGKGIB_03540)	-	4249643..4250944 (+)	1302	WP_239728240.1	ABC transporter substrate-binding protein	-
BDGGKGIB_RS17515 (BDGGKGIB_03541)	-	4251172..4252482 (-)	1311	WP_239728241.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
BDGGKGIB_RS17520 (BDGGKGIB_03542)	-	4252573..4252698 (-)	126	WP_239728242.1	photosystem II protein Y	-
BDGGKGIB_RS17525 (BDGGKGIB_03543)	-	4252914..4253444 (-)	531	WP_239728243.1	gamma carbonic anhydrase family protein	-
BDGGKGIB_RS17530 (BDGGKGIB_03544)	-	4253684..4254196 (+)	513	WP_239728244.1	TIGR02652 family protein	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 40712.00 Da
• Isoelectric Point: 4.4526

>NTDB_id=474121 BDGGKGIB_RS17505 WP_239728239.1 4248396..4249502(-) (pilM) [Nodularia sphaerocarpa UHCC 0038]
MVKSINNLLTKFYKGVGIELAPERVNVVQLRKQRQGLKLQSLTSVPVPEGVIIDGQIIDISTMAELIQQALAQSKIKTSR
VATAIPGQHSIVRLIPIPAELDDKEIREMVLNHEAGLYLPYPREEADVDYQKLGYFVDEEGIEKVQVLLVATRKDVTDSY
LNTFEQAGLEVDILEINSFALIRTIRDQLRRFGMQEAAVLVDIEFDSTEIAIVINGVPQFSRSVPIGTYQMQMALSRAMS
LPTSRDMDLLQGMVIPPNPIDGGQTGVTEINPSMAALLRVLGELTDELRRSIDFYLNQSENLEVVQIFLAGPGGGLQQLD
EFFTQRLGLPTVQIDPIGSLSLQVDEAKYPLAQRSGLGIILGLGMREV

Nucleotide

• Length: 1107 bp

>NTDB_id=474121 BDGGKGIB_RS17505 WP_239728239.1 4248396..4249502(-) (pilM) [Nodularia sphaerocarpa UHCC 0038]
GTGGTGAAAAGCATCAACAATCTGTTGACCAAATTTTATAAAGGGGTGGGCATTGAACTTGCACCAGAACGGGTGAATGT
AGTTCAGCTACGCAAGCAGCGCCAAGGCTTGAAATTACAATCCCTGACATCGGTACCGGTTCCCGAAGGGGTAATTATCG
ATGGTCAAATTATCGACATCTCCACAATGGCGGAATTAATTCAGCAAGCACTAGCCCAGAGTAAAATCAAAACTTCTCGT
GTGGCTACTGCTATACCAGGACAACATTCCATAGTGCGTCTGATACCAATACCGGCTGAGTTGGACGACAAAGAAATACG
GGAGATGGTGTTAAACCATGAAGCTGGCTTGTATTTACCCTATCCCCGTGAAGAAGCTGATGTGGATTATCAAAAACTTG
GGTATTTTGTAGATGAGGAGGGCATTGAGAAAGTACAGGTGTTGTTAGTTGCCACCCGCAAGGATGTCACAGATAGCTAT
CTTAATACTTTTGAACAGGCAGGATTGGAAGTCGATATTTTAGAGATTAACAGTTTTGCCCTGATTCGGACTATTCGTGA
TCAACTGCGGCGATTCGGGATGCAAGAGGCGGCGGTATTAGTTGATATAGAGTTCGACAGTACAGAGATAGCCATTGTGA
TTAATGGCGTGCCGCAATTTTCGCGCAGCGTGCCTATTGGTACTTATCAAATGCAAATGGCTCTTTCTAGGGCGATGAGT
TTACCTACATCACGTGATATGGATTTGTTACAGGGGATGGTGATTCCCCCAAATCCTATTGATGGTGGGCAGACTGGAGT
AACTGAAATCAATCCTAGTATGGCAGCTTTGTTGAGAGTTTTGGGAGAACTCACAGATGAGCTGCGCCGTTCTATCGATT
TTTACCTAAATCAAAGTGAAAACCTGGAAGTGGTGCAGATTTTCTTAGCAGGACCAGGAGGTGGACTGCAACAGCTAGAT
GAGTTTTTCACTCAAAGATTGGGCTTACCAACTGTCCAAATTGATCCGATTGGATCTTTGTCTTTGCAAGTTGATGAAGC
AAAATACCCCTTAGCACAACGTTCTGGGTTAGGGATAATACTTGGTCTAGGAATGCGGGAGGTGTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (17-237)

• Type IV pilus assembly protein PilM; (PilM_2) (283-367)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Synechocystis sp. PCC 6803	62.943	99.728	0.628