Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JRY11_RS03005 Genome accession   NZ_CP070382
Coordinates   584167..584922 (-) Length   251 a.a.
NCBI ID   WP_015425615.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579167..589922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS02985 (JRY11_000602) - 579626..580606 (+) 981 WP_248554329.1 alpha-ketoacid dehydrogenase subunit beta -
  JRY11_RS02990 (JRY11_000603) - 580599..582197 (+) 1599 WP_128267422.1 2-oxo acid dehydrogenase subunit E2 -
  JRY11_RS02995 (JRY11_000604) lpdA 582391..583809 (+) 1419 WP_057719879.1 dihydrolipoyl dehydrogenase -
  JRY11_RS03000 (JRY11_000605) - 583880..584053 (-) 174 WP_223247194.1 helix-turn-helix transcriptional regulator -
  JRY11_RS03005 (JRY11_000606) recO 584167..584922 (-) 756 WP_015425615.1 DNA repair protein RecO Machinery gene
  JRY11_RS03010 (JRY11_000607) - 585021..586196 (-) 1176 WP_057719881.1 pyridoxal phosphate-dependent aminotransferase -
  JRY11_RS03020 (JRY11_000609) - 586661..587182 (-) 522 WP_057719883.1 N-acetyltransferase -
  JRY11_RS03025 (JRY11_000610) - 587392..589014 (+) 1623 WP_057719885.1 SulP family inorganic anion transporter -
  JRY11_RS03030 (JRY11_000611) - 589095..589337 (-) 243 WP_012896919.1 TM2 domain-containing protein -
  JRY11_RS03035 (JRY11_000612) - 589398..589862 (-) 465 WP_057719887.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28716.89 Da        Isoelectric Point: 5.9537

>NTDB_id=474120 JRY11_RS03005 WP_015425615.1 584167..584922(-) (recO) [Lactococcus lactis strain KF140]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKNVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=474120 JRY11_RS03005 WP_015425615.1 584167..584922(-) (recO) [Lactococcus lactis strain KF140]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTAGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAAACGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGAAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534