Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GWQ54_RS30940 Genome accession   NZ_CP070373
Coordinates   6980458..6982392 (+) Length   644 a.a.
NCBI ID   WP_167153430.1    Uniprot ID   -
Organism   Streptomyces sp. MBT27     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6975458..6987392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS30925 - 6976717..6977016 (+) 300 WP_161249030.1 YtxH domain-containing protein -
  GWQ54_RS30930 - 6977153..6978598 (+) 1446 WP_161249026.1 FGGY family carbohydrate kinase -
  GWQ54_RS30935 rcrP 6978728..6980461 (+) 1734 WP_161249024.1 ABC transporter ATP-binding protein Regulator
  GWQ54_RS30940 rcrQ 6980458..6982392 (+) 1935 WP_167153430.1 ABC transporter ATP-binding protein Regulator
  GWQ54_RS30945 - 6982445..6983695 (-) 1251 WP_161249020.1 RNA polymerase sigma factor -
  GWQ54_RS30950 dnaG 6983826..6985721 (-) 1896 WP_167153428.1 DNA primase -
  GWQ54_RS30955 - 6985751..6987013 (-) 1263 WP_167153426.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69336.93 Da        Isoelectric Point: 5.4403

>NTDB_id=474085 GWQ54_RS30940 WP_167153430.1 6980458..6982392(+) (rcrQ) [Streptomyces sp. MBT27]
MSGPGGRMMMGGGPDQRSLNFKESGKRLVKRLAPEKTLLSVMLVAVVISVGLSVVGPKILGRATDLVFAGVIGRTPQMPA
GISKAQAIQGLRDRGQGGLADMLSGVDFTPGKGIDFGAVGSILLVALAVYVGAGLMMLVATRLSNRAINKTVFRMREDIQ
TKLSRLPLSYFDKAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALITVPLSIVVATKV
GKRSQPQFVQQWKSTGKLNAHIEEMYTGHALVKVFGRQNESAEAFAEQNDALYEASFKAQFNSGVMQPLMMFVSNLNYVL
VAVVGGLRVATGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQDPDTASPERPEVLRGAVA
LENVSFRYEPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDAARMTREELRSSIGMVLQ
DTWLFGGSIADNIAYGAAKEVTREEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYAAQFAQAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=474085 GWQ54_RS30940 WP_167153430.1 6980458..6982392(+) (rcrQ) [Streptomyces sp. MBT27]
ATGAGCGGGCCCGGTGGACGCATGATGATGGGCGGCGGCCCCGATCAGCGGTCCCTGAACTTCAAGGAATCCGGAAAGCG
GCTGGTCAAACGGCTCGCCCCGGAAAAGACGCTCCTGAGCGTGATGCTGGTCGCGGTGGTCATCAGCGTCGGCCTCTCGG
TGGTCGGGCCGAAGATACTCGGCCGGGCGACCGACCTGGTCTTCGCCGGTGTCATCGGCAGGACCCCGCAGATGCCGGCC
GGGATCAGCAAGGCGCAGGCCATCCAGGGCCTGCGCGACCGCGGCCAGGGCGGCCTCGCCGACATGCTCTCCGGGGTCGA
CTTCACCCCCGGCAAGGGCATCGACTTCGGCGCGGTCGGCAGCATCCTGCTCGTCGCCCTCGCCGTGTACGTGGGCGCGG
GGCTCATGATGCTGGTGGCCACCCGGCTCTCCAACCGGGCCATCAACAAGACCGTGTTCCGGATGCGCGAGGACATCCAG
ACCAAGCTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGGCCAAGCGCGGTGAGGTGCTCAGCCGCGCCACCAACGACAT
CGACAACATCTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCGTCGGCGTCCTGGTGA
TGATGTTCTGGATCTCGCCGCTGCTCGCGCTCGTGGCGCTGATCACCGTGCCGCTGTCGATCGTGGTGGCCACGAAGGTC
GGCAAGCGCTCGCAGCCGCAGTTCGTCCAGCAGTGGAAGTCCACGGGCAAGCTGAACGCGCACATCGAGGAGATGTACAC
CGGACACGCCCTGGTGAAGGTGTTCGGGCGGCAGAACGAGTCGGCCGAGGCGTTCGCCGAGCAGAACGACGCGTTGTACG
AGGCGTCGTTCAAGGCGCAGTTCAACAGCGGCGTCATGCAGCCCCTGATGATGTTCGTCTCCAACCTGAACTACGTCCTG
GTGGCGGTCGTCGGCGGGCTGCGGGTCGCGACGGGCTCGCTGTCCATCGGCGATGTGCAGGCGTTCATCCAGTACTCGCG
GCAGTTCTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCGTCGGCCGAGCGGATCT
TCGAGCTGCTCGACGCGGAGGAGCAGGACCCCGACACCGCGTCCCCGGAGCGCCCCGAGGTGCTGCGCGGCGCGGTCGCG
CTGGAGAACGTCTCGTTCCGCTACGAGCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGACGGTCGAGCCCGGCCACAC
GGTCGCGATCGTCGGCCCGACCGGCGCCGGCAAGACCACCCTGGTCAACCTGCTCATGCGGTTCTACGACGTCACCGGCG
GCCGGATCACCCTGGACGGGGTGGACGCGGCGCGGATGACCCGCGAGGAACTGCGCTCCTCCATCGGCATGGTGCTCCAG
GACACCTGGCTCTTCGGCGGCTCCATCGCGGACAACATCGCCTACGGCGCCGCGAAGGAGGTCACCCGCGAGGAGATCGA
GGAGGCGGCGAGGGCGGCGCACGCGGACCGCTTCATCCGGACGCTCCCCGAGGGCTACGACACCGTCATCGACGACGAGG
GCACCGGCGTCAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTG
GACGAGGCGACGAGTTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGGCGCAC
GTCGTTCGTCATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTCATCCTGGTCATGGAGAACGGGTCGATCGTCG
AACAGGGCACGCACGACGAGCTGTTGGCGGCGGAGGGTGCGTATGCCCGCCTGTACGCGGCCCAGTTCGCCCAGGCGGTC
GCGGAAGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-353)

ABC transporter (ABC_tran)

(416-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.323

96.273

0.388