Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   GWQ54_RS30935 Genome accession   NZ_CP070373
Coordinates   6978728..6980461 (+) Length   577 a.a.
NCBI ID   WP_161249024.1    Uniprot ID   -
Organism   Streptomyces sp. MBT27     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 6973728..6985461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS30905 - 6975247..6975426 (+) 180 WP_167153432.1 hypothetical protein -
  GWQ54_RS30925 - 6976717..6977016 (+) 300 WP_161249030.1 YtxH domain-containing protein -
  GWQ54_RS30930 - 6977153..6978598 (+) 1446 WP_161249026.1 FGGY family carbohydrate kinase -
  GWQ54_RS30935 rcrP 6978728..6980461 (+) 1734 WP_161249024.1 ABC transporter ATP-binding protein Regulator
  GWQ54_RS30940 rcrQ 6980458..6982392 (+) 1935 WP_167153430.1 ABC transporter ATP-binding protein Regulator
  GWQ54_RS30945 - 6982445..6983695 (-) 1251 WP_161249020.1 RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62557.67 Da        Isoelectric Point: 6.6669

>NTDB_id=474084 GWQ54_RS30935 WP_161249024.1 6978728..6980461(+) (rcrP) [Streptomyces sp. MBT27]
MLIRLLRSHLGPYKKPIALLVLLQLLQTSATLYLPTLNANIIDNGVVNGDTGYILGHGGIMIAVSLVQVFCNIGAVFYGA
RTAAALGRDVRAAVFARVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPILGIAVSLIVRRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDEYEQERFRGANTELTDVSLATGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSGHMQIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDTSVVP
PKAPVLELRRHGHLEVRGADFKYPGAEASVLRGVDLVARPGETTAIIGSTGSGKSTLLSLVPRLIDTTDGQVLVDGEDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEDLWHALEVAQAKEFVGRLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALGRETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=474084 GWQ54_RS30935 WP_161249024.1 6978728..6980461(+) (rcrP) [Streptomyces sp. MBT27]
GTGCTCATACGACTCCTGCGGTCCCACCTAGGGCCGTACAAGAAACCGATTGCCCTGCTGGTGCTGCTGCAACTGCTGCA
GACCAGCGCCACCCTTTACCTGCCCACCCTGAACGCGAACATCATCGACAACGGTGTCGTGAACGGGGACACGGGTTACA
TCCTGGGCCACGGCGGCATCATGATCGCCGTCAGCCTCGTCCAGGTGTTCTGCAACATCGGCGCCGTGTTCTACGGCGCC
AGGACCGCGGCGGCCCTCGGACGTGACGTCCGGGCCGCCGTCTTCGCGCGTGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
GCACTTCGGGGCGCCGTCCCTGATCACCCGCACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTGGGCCAGGACGTGCCGCTGTCCGCGGTG
CTCCTCGCCGTCGTCCCGATCCTCGGCATCGCGGTCTCGCTGATCGTGCGCAGGATGCGCCCGCTGTTCCGGACCATGCA
GACCCGCCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGGAGCGCTTCCGGGGCGCCAACACCGAGCTCACCGACGTCTCGCTGGCCACCGGCCGCCTGATGGCACTG
ATGTTCCCGACCGTCATGACCGTCGTGAACGTCTCCTCGGTGGCCGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CCACATGCAGATCGGCCAGCTCACCGCGTTCCTGGCGTACCTCATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGGCACCGACACCAGCGTCGTACCC
CCCAAGGCCCCGGTGCTCGAACTGCGCCGGCACGGCCATCTGGAGGTGCGCGGCGCCGACTTCAAGTACCCCGGCGCCGA
GGCCTCCGTGCTGCGCGGCGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGCTCGACGGGCAGCGGCA
AGTCGACGCTGCTCAGCCTGGTGCCCCGGCTGATCGACACCACCGACGGGCAGGTCCTGGTCGACGGCGAGGACGTCCGC
ACCCTGGACCCCGTCCTGCTCGCCAAGACCGTGTCCCTCGTCCCGCAGAAGCCGTACCTCTTCTCCGGGACCGTGGCCAC
GAACCTGCGGTACGGCAACCCCGACGCGAGCGACGAGGACCTCTGGCACGCCCTCGAAGTGGCGCAGGCCAAGGAGTTCG
TCGGCAGGCTGGAGGGCGGCCTGGACGCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCGATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCTCCGCGCTCGGGCGCGAGACCGCCGAGGCGACGGTCGTGATCGTCGCCCAGCGGGTCTCCACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGGCGGGTCGTCGGCACCGGCCGCCATCACGAACTGATGGCGGACAAC
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCTGAGGCGGCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.252

94.107

0.388