Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   GWQ54_RS16935 Genome accession   NZ_CP070373
Coordinates   3828993..3831254 (+) Length   753 a.a.
NCBI ID   WP_167151415.1    Uniprot ID   -
Organism   Streptomyces sp. MBT27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3823993..3836254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS16905 - 3824098..3824301 (-) 204 WP_167151426.1 ferredoxin -
  GWQ54_RS16910 - 3824340..3824987 (-) 648 WP_229861611.1 LmbU family transcriptional regulator -
  GWQ54_RS16915 - 3825214..3826062 (-) 849 WP_167151424.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  GWQ54_RS16920 - 3826177..3827067 (+) 891 WP_205380395.1 siderophore-interacting protein -
  GWQ54_RS16925 - 3827162..3828145 (+) 984 WP_167151419.1 ATP-binding cassette domain-containing protein -
  GWQ54_RS16930 - 3828135..3828902 (+) 768 WP_167151417.1 ABC transporter permease -
  GWQ54_RS16935 uvrA 3828993..3831254 (+) 2262 WP_167151415.1 excinuclease ABC subunit UvrA Machinery gene
  GWQ54_RS16940 - 3831671..3833026 (+) 1356 WP_167151413.1 GAF domain-containing SpoIIE family protein phosphatase -
  GWQ54_RS16945 - 3833206..3833463 (-) 258 WP_161252749.1 hypothetical protein -
  GWQ54_RS16950 - 3833627..3834613 (+) 987 WP_167151411.1 L-threonylcarbamoyladenylate synthase -
  GWQ54_RS16955 - 3834728..3835609 (-) 882 WP_167151408.1 SDR family oxidoreductase -
  GWQ54_RS16960 - 3835664..3836242 (+) 579 WP_167151406.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 81670.06 Da        Isoelectric Point: 6.5450

>NTDB_id=474059 GWQ54_RS16935 WP_167151415.1 3828993..3831254(+) (uvrA) [Streptomyces sp. MBT27]
MSTDAIKVTGARENNLKNISVEIPKRSLTVFTGVSGSGKSSLVFDTIAAEAQRQLNETFTAFVRNFLPDHGRPAMDAIEN
ISAAVVIDQKRLGGNPRSTVGTITDINPLLRLLFSRAGDPVGLPPSAFSFNDPQGMCPTCEGLGRVVELDLDAFVDRAKS
LNQGALLHPDFSTDSWYWLSYVESGFFDNDKPLADFTERELGLLLHGEMPQKLRLVWQGNTLNVKYEGLVDKFTRLYIKK
EDMSERSRQVFQRFVRSAPCRDCAGTRLAPAARGCRIAGHHIADLTSMEVERLAAVLAGLDLPHVKPVLKDLVSRLRHLV
DIGLGYLSLDRETRTLSGGESQRIKMVRHLSSSLTDMLYVFDEPSVGLHARDVHRLKELLLELRDKGNTVLVVEHDPDVM
AIADHVVDMGPKAGTLGGEVVFEGSFTGLVEADTLTGRHLRHRLPVKAAPRRATGALSVTGANSHNLTDVTVDFPTGVLT
VVTGVAGSGKSSLVNDDFLSQHPDAIVIDQSAVTGSRRSNTATYTGLLDPIRKLFAKANGVSASLFSANSKGACPNCQGL
GVLYTDLAFMETLKSVCEVCQGRRFADDVLGYRLRGRSISDVLAMTAAEAVDFFTEPKLRRTLHALNEVGLDYVGLGQPL
STLSGGECQRLKLAADLHRVGSVYVMDEPTTGLHLSDTHRLLGIVERIVDQGNTVIVIEHNLDIVKNADWIIDLGPEGGS
GGGKVLFEGTPAELLKAAGSYTAEYLRRDLSGA

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=474059 GWQ54_RS16935 WP_167151415.1 3828993..3831254(+) (uvrA) [Streptomyces sp. MBT27]
GTGAGTACCGACGCCATCAAGGTGACCGGTGCGCGGGAGAACAACCTCAAGAACATCTCGGTGGAGATCCCGAAACGGAG
TCTGACGGTCTTCACCGGCGTCTCCGGCTCGGGCAAGTCCTCCCTGGTGTTCGACACCATCGCTGCCGAGGCCCAGCGCC
AACTCAACGAGACCTTCACCGCCTTCGTCCGCAACTTCCTGCCCGACCACGGCCGTCCGGCCATGGACGCCATCGAGAAC
ATCTCCGCCGCCGTCGTCATCGACCAGAAACGGCTGGGCGGCAACCCACGCTCCACGGTCGGCACCATCACGGACATCAA
CCCGCTGCTGCGACTGCTGTTCTCACGGGCGGGCGACCCCGTGGGCCTGCCGCCCAGCGCGTTCTCGTTCAACGACCCCC
AAGGCATGTGCCCGACGTGCGAGGGGCTGGGCAGGGTCGTGGAACTCGACCTCGACGCGTTCGTCGACCGCGCCAAATCC
CTCAACCAGGGCGCGCTGCTGCACCCCGACTTCTCCACGGACAGCTGGTACTGGCTGAGTTACGTGGAGTCCGGCTTCTT
CGACAACGACAAGCCGCTCGCCGACTTCACCGAACGGGAGTTGGGGCTGCTGCTGCACGGCGAGATGCCACAGAAGCTCC
GCCTGGTCTGGCAGGGCAACACACTGAACGTCAAGTACGAGGGTCTGGTGGACAAGTTCACCAGGCTCTACATCAAGAAG
GAGGACATGTCCGAGCGCAGCCGCCAGGTGTTCCAGCGGTTCGTACGCTCGGCTCCCTGCCGGGACTGCGCGGGCACCCG
CCTCGCGCCCGCCGCCCGTGGCTGCCGGATCGCCGGCCACCACATCGCGGATCTCACCTCCATGGAGGTCGAGCGCCTGG
CCGCGGTCCTGGCGGGGCTGGACCTGCCCCACGTGAAACCGGTCCTGAAGGACCTGGTCTCCCGGCTTCGGCACCTGGTC
GACATCGGGCTCGGCTATCTGAGCCTGGACCGCGAGACCCGAACGCTGTCGGGCGGCGAGTCGCAACGGATCAAGATGGT
CCGCCACCTGTCGAGCAGTCTGACCGACATGCTGTACGTCTTCGACGAACCGAGCGTCGGACTGCACGCCCGCGACGTGC
ACCGGCTCAAGGAACTCCTGCTCGAACTGCGGGACAAGGGCAACACGGTGCTCGTGGTGGAGCACGACCCGGACGTCATG
GCCATCGCGGACCACGTGGTAGACATGGGACCGAAGGCCGGGACGCTGGGTGGCGAAGTGGTGTTCGAGGGCAGCTTCAC
CGGCCTCGTCGAAGCCGACACCCTCACCGGCCGCCACCTTCGCCACCGCCTGCCCGTGAAGGCCGCGCCCCGGCGCGCGA
CCGGCGCGCTCAGCGTCACCGGCGCGAACAGTCACAACCTCACCGATGTCACGGTCGACTTCCCCACGGGCGTCCTCACC
GTTGTCACCGGAGTCGCCGGATCGGGCAAGAGTTCTCTCGTCAACGACGACTTCCTGAGCCAACATCCGGATGCGATCGT
GATCGACCAGTCCGCGGTGACGGGGAGCCGGCGGTCCAACACCGCCACGTACACCGGACTCCTCGACCCGATCCGCAAGC
TGTTCGCCAAGGCCAACGGGGTCAGTGCGTCGCTGTTCAGCGCCAATTCCAAGGGCGCCTGCCCCAACTGCCAAGGACTG
GGCGTCCTTTACACCGACCTGGCGTTCATGGAGACGCTGAAGTCCGTGTGCGAGGTCTGCCAGGGCCGTCGTTTCGCCGA
TGACGTCCTCGGCTACCGACTGCGCGGCCGGTCGATCAGCGACGTACTGGCCATGACGGCGGCCGAGGCGGTGGACTTCT
TCACCGAGCCGAAGCTCCGCCGGACGCTGCACGCGCTGAACGAGGTGGGCCTGGACTACGTGGGGCTCGGCCAGCCGCTC
AGTACCCTGTCCGGCGGCGAGTGCCAGCGCCTCAAGCTCGCCGCCGACCTGCACCGCGTCGGCAGCGTCTACGTGATGGA
CGAGCCCACCACCGGCCTTCACCTGTCCGACACCCACCGCCTCCTCGGCATCGTCGAGCGCATCGTCGACCAGGGCAACA
CGGTGATCGTCATCGAGCACAACCTCGACATCGTCAAGAACGCCGACTGGATCATCGACCTCGGCCCCGAGGGCGGCAGC
GGCGGCGGGAAGGTCCTGTTCGAGGGAACCCCGGCGGAACTCCTGAAGGCCGCCGGCTCGTACACCGCCGAGTACCTCCG
CCGGGACCTTTCGGGCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(467-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

39.824

90.704

0.361
  uvrA Streptococcus pneumoniae TIGR4

39.824

90.704

0.361
  uvrA Streptococcus pneumoniae D39

39.824

90.704

0.361