Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   GWQ54_RS13535 Genome accession   NZ_CP070373
Coordinates   3096415..3098763 (-) Length   782 a.a.
NCBI ID   WP_167151947.1    Uniprot ID   -
Organism   Streptomyces sp. MBT27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3091415..3103763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS13515 - 3092967..3093722 (+) 756 WP_167151956.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  GWQ54_RS13520 - 3093801..3095549 (-) 1749 WP_167151953.1 glycosyl hydrolase family 18 protein -
  GWQ54_RS13525 - 3095833..3096063 (+) 231 WP_205530656.1 hypothetical protein -
  GWQ54_RS13530 - 3096124..3096339 (+) 216 WP_167151950.1 hypothetical protein -
  GWQ54_RS13535 uvrA 3096415..3098763 (-) 2349 WP_167151947.1 excinuclease ABC subunit UvrA Machinery gene
  GWQ54_RS13540 - 3098800..3099852 (-) 1053 WP_167151945.1 LLM class flavin-dependent oxidoreductase -
  GWQ54_RS13545 - 3099981..3100469 (+) 489 WP_167151943.1 hypothetical protein -
  GWQ54_RS13550 - 3100518..3100739 (-) 222 WP_161252389.1 dodecin -
  GWQ54_RS13555 - 3100982..3102235 (+) 1254 WP_167151940.1 extracellular solute-binding protein -
  GWQ54_RS13560 - 3102388..3102879 (+) 492 WP_167151938.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 83952.16 Da        Isoelectric Point: 7.1286

>NTDB_id=474055 GWQ54_RS13535 WP_167151947.1 3096415..3098763(-) (uvrA) [Streptomyces sp. MBT27]
MQSPSDPYVRVRGAREHNLRGVDVDVPRDCLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPKVGE
ISGLPPAVSLEQRRSAPSSRSSVGTVTTLSNSLRMLFSRAGDYPAGAERLDSDAFSPNTAVGACPECQGLGRIHRTSEAL
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDTLGYDVDRPWRELDQEDRDWILFTPEQPVVTVHPVREAGRIQRPYQGTY
FSAQRYVMKTFAESRSQTLRAKAERFLTAADCPVCEGRRLRPEALAVTFAGRTIAEVVSLPLTALAALLAEAGGGATADV
LTGDLLSRIAPVVELGLGYLSLDRTAPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLAVLDRLKAAG
NSVFVVEHHLDVMRHADWLVDVGPLAGEHGGRVLHSGPPDALARVEESATRRFLFDRSPAPRRTVRKPLRRLELTGVTRH
NLHGVDAAFPLGVFTAVTGVSGSGKSTLVDAISEQLPGVGRLVRVDQKPIGRTPRSNLATYTGLFDVVRKLFTETPEAKA
RGYKAGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYTPCPDCHGARYNTETLEVTHRGRNIAEVLDLTVEAAAEAFADT
PSAARSLGALLDVGLGYLRLGQPATELSGGEAQRIKLATELQRRRREHTLYVLDEPTTGLHPADVEILLRQLHGLVDAGH
SVIVVEHDMGVVAGADWVVDLGPGGGDEGGRVVAAGPPSEVAASRASRTAPYLARALVGDPR

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=474055 GWQ54_RS13535 WP_167151947.1 3096415..3098763(-) (uvrA) [Streptomyces sp. MBT27]
ATGCAAAGCCCCTCTGATCCGTACGTCCGTGTCCGCGGTGCCCGTGAGCACAATCTGCGCGGGGTGGACGTCGACGTTCC
GCGTGACTGTCTCGCCGTGTTCACCGGCGTCTCCGGATCGGGGAAGTCCTCACTCGCTTTCGGCACGATCTACGCCGAGG
CGCAGCGCCGCTACTTCGAATCGGTCGCGCCGTACGCGCGCCGGCTGATCCACCAGGTGGGAGCGCCGAAGGTCGGCGAG
ATCTCGGGCCTGCCGCCCGCCGTCTCGCTCGAACAGCGCCGCTCGGCGCCCAGCTCGCGTTCGTCGGTCGGCACGGTGAC
CACGCTCTCCAACTCGCTGCGGATGCTGTTCTCCCGGGCCGGGGACTATCCGGCGGGGGCGGAGCGCCTGGACTCGGACG
CCTTCTCGCCCAACACGGCCGTCGGCGCCTGCCCGGAGTGCCAGGGGCTCGGCCGTATCCACCGCACCAGTGAAGCGCTG
CTCGTGCCCGACCCCTCGCTCTCGATCCGCGAGGGCGCGATCGCCGCCTGGCCCGGCGCCTGGCAGGGCAAGAACCTGCG
CGACGTGCTCGACACGCTCGGGTACGACGTGGACCGGCCCTGGCGCGAGCTCGACCAGGAGGACCGGGACTGGATCCTGT
TCACGCCCGAGCAGCCGGTGGTGACCGTGCATCCGGTGCGCGAGGCGGGGCGCATCCAACGCCCTTACCAGGGAACGTAC
TTCAGTGCGCAGCGCTATGTGATGAAGACGTTCGCGGAGAGCAGGAGCCAGACGCTGCGGGCGAAGGCCGAGCGCTTCCT
GACCGCAGCCGACTGCCCGGTGTGCGAGGGCCGCCGGCTGCGGCCCGAGGCGCTGGCCGTGACGTTCGCGGGCCGCACGA
TCGCCGAGGTCGTCTCCCTCCCGCTCACCGCCCTCGCCGCGCTGCTCGCCGAAGCGGGCGGCGGTGCGACCGCGGACGTG
CTCACCGGCGATCTGCTCTCCCGCATCGCCCCGGTCGTCGAGCTGGGCCTGGGCTACCTGAGCCTGGACCGGACCGCGCC
CACCCTCTCGGCGGGCGAACTGCAACGCCTGCGGCTCGCCACCCAGTTGCGTTCGGGTCTGTTCGGCGTGGTGTACGTCC
TGGACGAGCCGTCGGCGGGGCTGCACCCGGCCGACACCGAGGCGCTGCTCGCGGTCCTGGACCGGCTCAAGGCGGCGGGC
AATTCGGTGTTCGTCGTCGAGCACCATCTGGATGTGATGCGGCACGCGGACTGGCTGGTGGACGTGGGCCCGCTGGCCGG
TGAACACGGCGGCCGGGTGCTGCACAGCGGGCCGCCCGACGCCCTCGCGCGGGTCGAGGAGTCGGCGACCCGGCGCTTCC
TGTTCGACCGCTCCCCCGCGCCGCGCCGCACGGTCCGCAAGCCCCTGCGCCGGCTCGAACTGACCGGTGTGACCCGGCAC
AATCTGCACGGCGTGGACGCGGCGTTCCCGCTCGGGGTGTTCACGGCGGTCACCGGCGTCTCCGGCTCCGGCAAGTCCAC
CCTCGTGGATGCGATCTCCGAACAACTCCCGGGTGTGGGACGTCTGGTGAGGGTGGATCAGAAACCCATCGGGCGCACTC
CGCGCTCCAATCTGGCCACCTACACCGGCCTCTTCGACGTCGTGCGCAAGCTGTTCACGGAGACACCGGAGGCGAAGGCA
CGCGGCTACAAGGCGGGCCGGTTCTCCTTCAACGTGGCGGGCGGCCGGTGCGAGACCTGCCAGGGCGAGGGGTTCGTCTC
GGTGGAGCTGCTCTTCCTTCCGAGCACGTACACGCCCTGCCCGGACTGCCACGGCGCCCGCTACAACACCGAGACCCTCG
AAGTGACCCACCGGGGCCGCAACATCGCCGAGGTGCTCGACCTCACGGTGGAGGCGGCGGCCGAGGCCTTCGCGGACACC
CCATCGGCCGCCCGCAGTCTGGGCGCGCTGCTGGACGTCGGCCTCGGCTATCTGCGCCTGGGCCAGCCCGCCACCGAACT
GTCGGGCGGCGAGGCCCAACGCATCAAGCTGGCAACGGAGTTGCAGCGTCGGCGCCGCGAACACACCCTGTACGTCCTGG
ACGAGCCCACGACGGGTCTGCACCCCGCCGACGTGGAGATCCTGCTGCGCCAGCTGCACGGCCTGGTCGACGCGGGGCAC
TCGGTGATCGTCGTCGAGCACGACATGGGCGTGGTCGCGGGCGCCGACTGGGTGGTCGACCTCGGCCCCGGCGGCGGCGA
CGAGGGCGGCCGCGTGGTGGCCGCGGGCCCCCCGTCCGAAGTCGCCGCATCGCGCGCGAGCCGCACGGCGCCGTACCTGG
CGAGGGCACTGGTCGGCGATCCCCGGTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(482-697)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.888

86.829

0.381
  uvrA Streptococcus pneumoniae TIGR4

43.888

86.829

0.381
  uvrA Streptococcus pneumoniae D39

43.888

86.829

0.381