Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GWQ54_RS03120 Genome accession   NZ_CP070373
Coordinates   685669..687066 (-) Length   465 a.a.
NCBI ID   WP_167157905.1    Uniprot ID   A0ABQ3AJ66
Organism   Streptomyces sp. MBT27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 680669..692066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS03095 - 680739..681296 (-) 558 WP_161246881.1 SigE family RNA polymerase sigma factor -
  GWQ54_RS03100 - 681572..682480 (-) 909 WP_229861542.1 A/G-specific adenine glycosylase -
  GWQ54_RS03105 - 682572..683198 (-) 627 WP_161246879.1 phosphatase PAP2 family protein -
  GWQ54_RS03110 - 683364..684179 (+) 816 WP_167157907.1 hypothetical protein -
  GWQ54_RS03115 disA 684443..685567 (-) 1125 WP_161244434.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  GWQ54_RS03120 radA/sms 685669..687066 (-) 1398 WP_167157905.1 DNA repair protein RadA Machinery gene
  GWQ54_RS03125 - 687395..689053 (+) 1659 WP_205530616.1 sigma-70 family RNA polymerase sigma factor -
  GWQ54_RS03130 - 689103..689939 (-) 837 WP_161251998.1 hypothetical protein -
  GWQ54_RS03135 - 689992..690924 (+) 933 WP_167157903.1 Ppx/GppA phosphatase family protein -
  GWQ54_RS03140 - 691103..691924 (+) 822 WP_167157901.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48893.99 Da        Isoelectric Point: 8.0021

>NTDB_id=474022 GWQ54_RS03120 WP_167157905.1 685669..687066(-) (radA/sms) [Streptomyces sp. MBT27]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGEVDGRQATARTTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYITGEESASQVRLRADRIKALNDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRGRRAQAPREE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=474022 GWQ54_RS03120 WP_167157905.1 685669..687066(-) (radA/sms) [Streptomyces sp. MBT27]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACGGCGGCGGGCC
GGGTCTCCACGGCCGCGCTGCCCATCGGTGAGGTCGACGGCCGCCAGGCGACCGCCCGCACCACGGGCGTCGCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTGCCGGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTCCTGGACGTGGCGGCCAAGGCGGCCAGTGACGACCACCGCACGCTGTACATCACGGGCGAGGAGTCGGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCAAGGCCCTCAACGACCACCTGTACCTGGCGGCCGAGACCGACCTGTCCGCGGTGCTC
GGCCACCTCGACGCGGTGAAGCCCTCCCTGCTCGTCCTCGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGACGGCGC
ACCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGACCCCGCCTGCTGGAACACCTGGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGGCACGCACGGCTCCGTCTCGTGCGCGGCGTCAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGACTCGCCGACCCCAGCGGCCTGTTCCTCACCCGGCGCGACGTCGCGGTGCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCGCCGCGCCGCACCACGTCGGGCCTGGAGACCTCGCGCGTCTCGATGATGCTCGCGGTGCTGGAACAGCGGGGTCG
CATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCGACCGTCGGCGGGGTGAAGCTCTCCGAGCCCGCCGCCGACCTCG
CGATCGCGCTCGCGCTCGCCTCCGCGGCCAGCGACACTCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCACGCCCTGGT
GCCGACCGACCCGGGCAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGTGACGCGCTGCGGGTGCTGC
CGCGCGGGCGTCGCGCACAGGCCCCACGGGAGGAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(82-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.592

97.419

0.434
  radA Streptococcus pneumoniae Rx1

42.478

97.204

0.413
  radA Streptococcus pneumoniae D39

42.478

97.204

0.413
  radA Streptococcus pneumoniae R6

42.478

97.204

0.413
  radA Streptococcus pneumoniae TIGR4

42.478

97.204

0.413
  radA Streptococcus mitis SK321

43.925

92.043

0.404
  radA Streptococcus mitis NCTC 12261

43.925

92.043

0.404