Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GWQ54_RS00735 Genome accession   NZ_CP070373
Coordinates   159387..160508 (-) Length   373 a.a.
NCBI ID   WP_161245753.1    Uniprot ID   A0ABQ3AIB5
Organism   Streptomyces sp. MBT27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 154387..165508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS00725 gyrB 156382..158445 (-) 2064 WP_167158469.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  GWQ54_RS00730 - 158848..159390 (-) 543 WP_161245754.1 DciA family protein -
  GWQ54_RS00735 recF 159387..160508 (-) 1122 WP_161245753.1 DNA replication/repair protein RecF Machinery gene
  GWQ54_RS00740 gnd 160551..161426 (-) 876 WP_167158468.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  GWQ54_RS00745 dnaN 161557..162687 (-) 1131 WP_161245752.1 DNA polymerase III subunit beta -
  GWQ54_RS00750 dnaA 163623..165437 (-) 1815 WP_161245751.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40514.13 Da        Isoelectric Point: 6.5143

>NTDB_id=474013 GWQ54_RS00735 WP_161245753.1 159387..160508(-) (recF) [Streptomyces sp. MBT27]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLASLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAAVRSDYERVLKQ
RNTLLKSAAMARRHGGRGMDLSTLDVWDQHLAQAGAELLAQRLDLIAALQPLADKAYEQLAPGGGPLALEYKPSAPGTGH
TREELYEQLIAAFADVRKQEIERGVTLAGPHRDDLLLRLGELPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDAKRRDRLAELVAPGEQVLVTAAVDDDVPGILAGVRYEVAAGEVARV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=474013 GWQ54_RS00735 WP_161245753.1 159387..160508(-) (recF) [Streptomyces sp. MBT27]
ATGCACGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTTCCGCTCGACCCGGGCGTCACCGC
TTTCGTGGGTGCCAACGGCCAGGGCAAGACCAATCTGGTCGAGGCCGTCGGCTACCTCGCCTCGCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTGCGCATGGGTGCCGAGCGGGCCGTGATCCGCGCGGCCGTCACCCAGGGCGAGCGCTCC
CAGCTGATCGAGCTGGAGCTGAACCCGGGCCGCGCCAACCGAGCCCGTATCAACAGGTCCTCGCAGGTCAGACCCCGCGA
TGTACTGGGGATCGTGCGGACCGTCCTGTTCGCGCCCGAGGACCTCGCGCTGGTCAAGGGCGACCCGGGCGAGCGGCGCC
GCTTCCTCGACGAGCTGATCACCGCGCGCTCGCCCCGGATGGCGGCCGTACGGTCCGACTACGAGCGCGTCCTCAAGCAG
CGCAACACCCTTCTGAAGTCCGCCGCGATGGCCCGCCGGCACGGCGGCCGTGGCATGGACCTGTCCACGCTCGACGTCTG
GGACCAGCACCTCGCCCAGGCCGGCGCCGAGCTTCTCGCCCAGCGCCTCGACCTGATCGCCGCACTGCAGCCGCTCGCCG
ACAAGGCGTACGAGCAACTCGCCCCGGGCGGCGGCCCGTTGGCCCTGGAGTACAAGCCGTCCGCGCCCGGCACCGGGCAC
ACCCGCGAGGAGCTGTACGAGCAGCTCATCGCGGCCTTCGCGGACGTGCGCAAGCAGGAGATCGAACGCGGGGTGACGCT
GGCCGGGCCGCACCGCGACGACCTGCTGCTCCGCCTCGGCGAGCTGCCCGCCAAGGGATACGCGAGCCACGGCGAGTCCT
GGTCGTACGCGCTCGCGCTGCGCCTCGCCTCGTACGACCTGCTGCGTGCCGAGGGCAATGAGCCGGTCCTGGTACTCGAC
GACGTCTTCGCGGAGCTGGACGCCAAGCGGCGCGACCGCCTCGCGGAGCTGGTCGCCCCGGGCGAGCAGGTGCTGGTGAC
GGCCGCGGTGGACGACGACGTGCCGGGAATCCTCGCGGGCGTCCGGTACGAGGTCGCGGCGGGCGAGGTGGCACGGGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.81

94.638

0.367