Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JWB56_RS09025 Genome accession   NZ_CP070362
Coordinates   1789574..1790209 (-) Length   211 a.a.
NCBI ID   WP_000264044.1    Uniprot ID   A0A0D5YJ84
Organism   Acinetobacter baumannii strain AB5075-VUB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784574..1795209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB56_RS09000 (JWB56_08855) - 1784630..1785610 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  JWB56_RS09005 (JWB56_08860) kdsB 1785622..1786383 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JWB56_RS09010 (JWB56_08865) lpxK 1786393..1787403 (-) 1011 WP_000050479.1 tetraacyldisaccharide 4'-kinase -
  JWB56_RS09015 (JWB56_08870) msbA 1787406..1789133 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  JWB56_RS09020 (JWB56_08875) - 1789130..1789558 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  JWB56_RS09025 (JWB56_08880) exbB 1789574..1790209 (-) 636 WP_000264044.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JWB56_RS09030 (JWB56_08885) - 1790259..1791146 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  JWB56_RS09035 (JWB56_08890) - 1791143..1791925 (-) 783 WP_000057212.1 ParA family protein -
  JWB56_RS09040 (JWB56_08895) rsmG 1791947..1792579 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  JWB56_RS09045 (JWB56_08900) murU 1792667..1793356 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  JWB56_RS09050 (JWB56_08905) - 1793356..1794369 (-) 1014 WP_001096103.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23254.21 Da        Isoelectric Point: 6.4861

>NTDB_id=473958 JWB56_RS09025 WP_000264044.1 1789574..1790209(-) (exbB) [Acinetobacter baumannii strain AB5075-VUB]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDVSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSIMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=473958 JWB56_RS09025 WP_000264044.1 1789574..1790209(-) (exbB) [Acinetobacter baumannii strain AB5075-VUB]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGTCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATCTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAATCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YJ84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.979

90.521

0.398