Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   H5404_RS21205 Genome accession   NZ_CP060088
Coordinates   2867356..2867874 (-) Length   172 a.a.
NCBI ID   WP_029816118.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2862356..2872874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS21180 (H5404_21180) rimM 2862465..2863013 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  H5404_RS21185 (H5404_21185) rpsP 2863042..2863290 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  H5404_RS21190 (H5404_21190) ffh 2863500..2864882 (-) 1383 WP_005462555.1 signal recognition particle protein -
  H5404_RS21195 (H5404_21195) - 2865095..2865889 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  H5404_RS21200 (H5404_21200) - 2866015..2867295 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  H5404_RS21205 (H5404_21205) luxS 2867356..2867874 (-) 519 WP_029816118.1 S-ribosylhomocysteine lyase Regulator
  H5404_RS21210 (H5404_21210) - 2867941..2868546 (-) 606 WP_015297256.1 hypothetical protein -
  H5404_RS21215 (H5404_21215) gshA 2868571..2870139 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19061.79 Da        Isoelectric Point: 4.7134

>NTDB_id=473897 H5404_RS21205 WP_029816118.1 2867356..2867874(-) (luxS) [Vibrio parahaemolyticus strain TJA114]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLVSMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=473897 H5404_RS21205 WP_029816118.1 2867356..2867874(-) (luxS) [Vibrio parahaemolyticus strain TJA114]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGTTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878