Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H5404_RS14605 Genome accession   NZ_CP060088
Coordinates   1437244..1438665 (-) Length   473 a.a.
NCBI ID   WP_140217933.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1432244..1443665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS14580 (H5404_14580) - 1432808..1433458 (+) 651 WP_020840479.1 thiopurine S-methyltransferase -
  H5404_RS14585 (H5404_14585) purT 1433560..1434735 (-) 1176 WP_140217931.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  H5404_RS14590 (H5404_14590) cdd 1434883..1435770 (-) 888 WP_020840481.1 cytidine deaminase -
  H5404_RS14595 (H5404_14595) - 1436135..1436812 (-) 678 WP_025522457.1 LrgB family protein -
  H5404_RS14600 (H5404_14600) - 1436814..1437188 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  H5404_RS14605 (H5404_14605) sbcB 1437244..1438665 (-) 1422 WP_140217933.1 exodeoxyribonuclease I Machinery gene
  H5404_RS14610 (H5404_14610) - 1438821..1440194 (-) 1374 WP_140217935.1 L-cystine transporter -
  H5404_RS14615 (H5404_14615) - 1440387..1441082 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  H5404_RS14620 (H5404_14620) cobT 1441766..1442809 (+) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  H5404_RS14625 (H5404_14625) - 1442854..1443606 (+) 753 WP_153645063.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54644.99 Da        Isoelectric Point: 5.0409

>NTDB_id=473888 H5404_RS14605 WP_140217933.1 1437244..1438665(-) (sbcB) [Vibrio parahaemolyticus strain TJA114]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESNEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=473888 H5404_RS14605 WP_140217933.1 1437244..1438665(-) (sbcB) [Vibrio parahaemolyticus strain TJA114]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTA
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797