Detailed information NTG0473878

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: H5404_RS09200
• Genome accession: NZ_CP060088
• Coordinates: 247236..248282 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain TJA114
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 242236..253282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5404_RS09170 (H5404_09170)	zapB	242405..242647 (+)	243	WP_005481417.1	cell division protein ZapB	-
H5404_RS09175 (H5404_09175)	rraA	242752..243264 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
H5404_RS09180 (H5404_09180)	-	243341..244258 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
H5404_RS09185 (H5404_09185)	hslU	244443..245774 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
H5404_RS09190 (H5404_09190)	hslV	245798..246349 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
H5404_RS09195 (H5404_09195)	ftsN	246514..247059 (-)	546	WP_005481405.1	cell division protein FtsN	-
H5404_RS09200 (H5404_09200)	cytR	247236..248282 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
H5404_RS09205 (H5404_09205)	priA	248576..250780 (-)	2205	WP_025622698.1	primosomal protein N'	-
H5404_RS09210 (H5404_09210)	rpmE	251075..251296 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
H5404_RS09215 (H5404_09215)	rpsJ	251754..252065 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
H5404_RS09220 (H5404_09220)	rplC	252080..252709 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=473878 H5404_RS09200 WP_254894148.1 247236..248282(-) (cytR) [Vibrio parahaemolyticus strain TJA114]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=473878 H5404_RS09200 WP_254894148.1 247236..248282(-) (cytR) [Vibrio parahaemolyticus strain TJA114]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871