Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   H5404_RS06530 Genome accession   NZ_CP060087
Coordinates   1453508..1454605 (-) Length   365 a.a.
NCBI ID   WP_031418895.1    Uniprot ID   A0AA46QUX5
Organism   Vibrio parahaemolyticus strain TJA114     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1448508..1459605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS06515 (H5404_06515) - 1449188..1450243 (-) 1056 WP_025623626.1 HlyD family secretion protein -
  H5404_RS06520 (H5404_06520) - 1450281..1450736 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  H5404_RS06525 (H5404_06525) luxQ 1450948..1453508 (-) 2561 Protein_1302 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  H5404_RS06530 (H5404_06530) luxP 1453508..1454605 (-) 1098 WP_031418895.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  H5404_RS06535 (H5404_06535) - 1454957..1455277 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  H5404_RS06540 (H5404_06540) - 1455274..1455924 (-) 651 WP_017447360.1 YceH family protein -
  H5404_RS06545 (H5404_06545) - 1456102..1456317 (-) 216 WP_005477197.1 hypothetical protein -
  H5404_RS06550 (H5404_06550) - 1456645..1456959 (+) 315 WP_005453573.1 DUF496 family protein -
  H5404_RS06555 (H5404_06555) - 1457082..1458419 (+) 1338 WP_153645212.1 MATE family efflux transporter -
  H5404_RS06560 (H5404_06560) - 1458493..1459470 (-) 978 WP_140218357.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41388.74 Da        Isoelectric Point: 4.9624

>NTDB_id=473875 H5404_RS06530 WP_031418895.1 1453508..1454605(-) (luxP) [Vibrio parahaemolyticus strain TJA114]
MNKALVLSLISIVGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPITPEKRQPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=473875 H5404_RS06530 WP_031418895.1 1453508..1454605(-) (luxP) [Vibrio parahaemolyticus strain TJA114]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGTCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTACCCCTGAAAAAAGACAACCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTATCAGATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGTGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCATCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCAACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTTTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.835

99.726

0.647