Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   H5409_RS25710 Genome accession   NZ_CP060086
Coordinates   5553756..5554280 (+) Length   174 a.a.
NCBI ID   WP_023100237.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5548756..5559280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5409_RS25690 (H5409_25690) pilR 5550018..5551355 (+) 1338 WP_121382201.1 two-component system response regulator PilR Regulator
  H5409_RS25695 (H5409_25695) thiO 5551401..5552495 (-) 1095 WP_121382199.1 glycine oxidase ThiO -
  H5409_RS25700 (H5409_25700) - 5552635..5553135 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  H5409_RS25705 (H5409_25705) - 5553258..5553746 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  H5409_RS25710 (H5409_25710) pilV 5553756..5554280 (+) 525 WP_023100237.1 type IV pilus modification protein PilV Machinery gene
  H5409_RS25715 (H5409_25715) - 5554289..5555104 (+) 816 WP_016254061.1 PilW family protein -
  H5409_RS25720 (H5409_25720) - 5555101..5555706 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  H5409_RS25725 (H5409_25725) - 5555720..5559196 (+) 3477 WP_023100239.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18747.51 Da        Isoelectric Point: 4.9113

>NTDB_id=473862 H5409_RS25710 WP_023100237.1 5553756..5554280(+) (pilV) [Pseudomonas aeruginosa strain JNQH-PA57]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQAAKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=473862 H5409_RS25710 WP_023100237.1 5553756..5554280(+) (pilV) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCGCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598