Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   H5405_RS19380 Genome accession   NZ_CP060085
Coordinates   3550846..3551010 (-) Length   54 a.a.
NCBI ID   WP_269195014.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3545846..3556010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS19380 comS 3550846..3551010 (-) 165 WP_269195014.1 competence protein ComS Regulator
  H5405_RS19385 srfAB 3551075..3554119 (-) 3045 Protein_3429 surfactin non-ribosomal peptide synthetase SrfAB -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6238.22 Da        Isoelectric Point: 11.7559

>NTDB_id=473837 H5405_RS19380 WP_269195014.1 3550846..3551010(-) (comS) [Bacillus velezensis strain HAB-2]
MRARRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=473837 H5405_RS19380 WP_269195014.1 3550846..3551010(-) (comS) [Bacillus velezensis strain HAB-2]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5