Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H5405_RS18890 Genome accession   NZ_CP060085
Coordinates   3856119..3856409 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3851119..3861409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS18875 (H5405_18875) - 3851340..3852665 (-) 1326 WP_139325691.1 G5 and 3D domain-containing protein -
  H5405_RS18880 (H5405_18880) - 3852800..3853567 (-) 768 WP_029326250.1 TatD family hydrolase -
  H5405_RS18885 (H5405_18885) metG 3853644..3855635 (-) 1992 WP_029326249.1 methionine--tRNA ligase -
  H5405_RS18890 (H5405_18890) abrB 3856119..3856409 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  H5405_RS18895 (H5405_18895) rsmI 3856459..3857340 (-) 882 WP_007615166.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H5405_RS18900 (H5405_18900) - 3857315..3857614 (-) 300 WP_007615158.1 GIY-YIG nuclease family protein -
  H5405_RS18905 (H5405_18905) - 3857601..3858344 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H5405_RS18910 (H5405_18910) yabA 3858405..3858764 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  H5405_RS18915 (H5405_18915) ricT 3858779..3859606 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  H5405_RS18920 (H5405_18920) holB 3859609..3860598 (-) 990 WP_007615157.1 DNA polymerase III subunit delta' -
  H5405_RS18925 (H5405_18925) - 3860610..3861050 (-) 441 WP_004264730.1 YaaR family protein -
  H5405_RS18930 (H5405_18930) darA 3861063..3861392 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=473835 H5405_RS18890 WP_169510469.1 3856119..3856409(+) (abrB) [Bacillus velezensis strain HAB-2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=473835 H5405_RS18890 WP_169510469.1 3856119..3856409(+) (abrB) [Bacillus velezensis strain HAB-2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979