Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H5405_RS17350 Genome accession   NZ_CP060085
Coordinates   3567628..3568065 (+) Length   145 a.a.
NCBI ID   WP_029325718.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3562628..3573065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS17335 (H5405_17335) - 3565487..3565849 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  H5405_RS17340 (H5405_17340) hxlA 3566081..3566716 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  H5405_RS17345 (H5405_17345) hxlB 3566713..3567270 (+) 558 WP_007609301.1 6-phospho-3-hexuloisomerase -
  H5405_RS17350 (H5405_17350) nucA/comI 3567628..3568065 (+) 438 WP_029325718.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  H5405_RS17355 (H5405_17355) nin/comJ 3568086..3568484 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  H5405_RS17360 (H5405_17360) - 3568639..3568917 (-) 279 WP_373271686.1 YckD family protein -
  H5405_RS17365 (H5405_17365) - 3569035..3569469 (-) 435 WP_007609296.1 RDD family protein -
  H5405_RS17370 (H5405_17370) - 3569484..3570620 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  H5405_RS17375 (H5405_17375) - 3570685..3571887 (-) 1203 WP_029325717.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.31 Da        Isoelectric Point: 7.9203

>NTDB_id=473830 H5405_RS17350 WP_029325718.1 3567628..3568065(+) (nucA/comI) [Bacillus velezensis strain HAB-2]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCQQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=473830 H5405_RS17350 WP_029325718.1 3567628..3568065(+) (nucA/comI) [Bacillus velezensis strain HAB-2]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAAACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGTCGT
GAGCAATCTCTTAAACATGTACCTGTAAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTCAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634