Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   H5405_RS14945 Genome accession   NZ_CP060085
Coordinates   3061556..3062347 (-) Length   263 a.a.
NCBI ID   WP_029325989.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056556..3067347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS14905 (H5405_14905) - 3056823..3057158 (-) 336 WP_029325988.1 SdpI family protein -
  H5405_RS14910 (H5405_14910) - 3057244..3057771 (-) 528 WP_007610160.1 SH3 domain-containing protein -
  H5405_RS14915 (H5405_14915) - 3057903..3058172 (-) 270 WP_003155492.1 YfhJ family protein -
  H5405_RS14920 (H5405_14920) - 3058296..3058448 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  H5405_RS14925 (H5405_14925) - 3058594..3059505 (+) 912 WP_007610159.1 serine protease -
  H5405_RS14930 (H5405_14930) - 3059468..3059857 (+) 390 WP_007610158.1 DUF2606 family protein -
  H5405_RS14935 (H5405_14935) - 3059897..3061090 (-) 1194 WP_025284446.1 MFS transporter -
  H5405_RS14940 (H5405_14940) - 3061235..3061549 (-) 315 WP_007610157.1 YfhH family protein -
  H5405_RS14945 (H5405_14945) recX 3061556..3062347 (-) 792 WP_029325989.1 recombination regulator RecX Regulator
  H5405_RS14950 (H5405_14950) - 3062439..3063338 (+) 900 WP_007610148.1 TIGR01777 family oxidoreductase -
  H5405_RS14955 (H5405_14955) - 3063396..3063506 (+) 111 WP_003155504.1 YfhE family protein -
  H5405_RS14960 (H5405_14960) - 3063578..3063769 (+) 192 WP_029325990.1 YfhD family protein -
  H5405_RS14965 (H5405_14965) - 3063809..3064393 (-) 585 WP_007408549.1 nitroreductase -
  H5405_RS14970 (H5405_14970) - 3064470..3065354 (-) 885 WP_007610145.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31020.21 Da        Isoelectric Point: 6.0921

>NTDB_id=473825 H5405_RS14945 WP_029325989.1 3061556..3062347(-) (recX) [Bacillus velezensis strain HAB-2]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRYDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=473825 H5405_RS14945 WP_029325989.1 3061556..3062347(-) (recX) [Bacillus velezensis strain HAB-2]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTATGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGACGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791