Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   H5405_RS13895 Genome accession   NZ_CP060085
Coordinates   2868891..2869469 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain HAB-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863891..2874469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS13860 (H5405_13860) - 2864083..2865552 (+) 1470 WP_029325959.1 sodium:solute symporter -
  H5405_RS13865 (H5405_13865) - 2865594..2865911 (+) 318 WP_003155166.1 YbjQ family protein -
  H5405_RS13870 (H5405_13870) - 2865944..2866213 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  H5405_RS13875 (H5405_13875) - 2866409..2867119 (+) 711 WP_029325960.1 YrpD family protein -
  H5405_RS13880 (H5405_13880) - 2867348..2867856 (-) 509 Protein_2761 MepB family protein -
  H5405_RS13885 (H5405_13885) - 2867979..2868350 (-) 372 WP_029325961.1 iron chaperone -
  H5405_RS13890 (H5405_13890) - 2868377..2868745 (-) 369 WP_012117235.1 iron chaperone -
  H5405_RS13895 (H5405_13895) comK 2868891..2869469 (-) 579 WP_003155179.1 competence protein ComK Regulator
  H5405_RS13900 (H5405_13900) - 2869785..2870018 (+) 234 WP_007610478.1 IDEAL domain-containing protein -
  H5405_RS13905 (H5405_13905) - 2870049..2870906 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  H5405_RS13910 (H5405_13910) - 2871031..2872554 (+) 1524 WP_007610476.1 FAD-dependent oxidoreductase -
  H5405_RS19505 - 2872788..2873162 (+) 375 Protein_2768 protoglobin domain-containing protein -
  H5405_RS19510 - 2873172..2873969 (+) 798 WP_374058408.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=473820 H5405_RS13895 WP_003155179.1 2868891..2869469(-) (comK) [Bacillus velezensis strain HAB-2]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=473820 H5405_RS13895 WP_003155179.1 2868891..2869469(-) (comK) [Bacillus velezensis strain HAB-2]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCATGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823