Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   H5405_RS13535 Genome accession   NZ_CP060085
Coordinates   2802072..2803025 (-) Length   317 a.a.
NCBI ID   WP_007610578.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797072..2808025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS13505 (H5405_13505) - 2797226..2798212 (-) 987 WP_029325950.1 ABC transporter ATP-binding protein -
  H5405_RS13510 (H5405_13510) - 2798386..2799171 (-) 786 WP_029325951.1 DUF2268 domain-containing protein -
  H5405_RS13515 (H5405_13515) fabF 2799254..2800492 (-) 1239 WP_007610580.1 beta-ketoacyl-ACP synthase II -
  H5405_RS13520 (H5405_13520) - 2800515..2801453 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  H5405_RS13525 (H5405_13525) - 2801621..2801839 (+) 219 WP_007610579.1 hypothetical protein -
  H5405_RS13530 (H5405_13530) comZ 2801868..2802059 (-) 192 WP_003155061.1 ComZ family protein Regulator
  H5405_RS13535 (H5405_13535) med 2802072..2803025 (-) 954 WP_007610578.1 BMP family ABC transporter substrate-binding protein Regulator
  H5405_RS13540 (H5405_13540) - 2803115..2803681 (-) 567 WP_007610577.1 hypothetical protein -
  H5405_RS13545 (H5405_13545) - 2803764..2804498 (-) 735 WP_007610576.1 hypothetical protein -
  H5405_RS13550 (H5405_13550) - 2804759..2804944 (+) 186 WP_003155069.1 YjzD family protein -
  H5405_RS13555 (H5405_13555) - 2804981..2805160 (-) 180 WP_003155070.1 YjzC family protein -
  H5405_RS13560 (H5405_13560) argF 2805236..2806207 (-) 972 WP_007610570.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35357.02 Da        Isoelectric Point: 4.6686

>NTDB_id=473817 H5405_RS13535 WP_007610578.1 2802072..2803025(-) (med) [Bacillus velezensis strain HAB-2]
MITRLVMIFSLLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=473817 H5405_RS13535 WP_007610578.1 2802072..2803025(-) (med) [Bacillus velezensis strain HAB-2]
TTGATCACCAGGCTTGTCATGATCTTTTCTCTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCCATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGACACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTTGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTATACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATACAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782