Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   H5405_RS12200 Genome accession   NZ_CP060085
Coordinates   2555490..2555954 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain HAB-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2550490..2560954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS19285 - 2550999..2551545 (-) 547 Protein_2419 hypothetical protein -
  H5405_RS12180 (H5405_12180) fadH 2551659..2552423 (-) 765 WP_029325883.1 2,4-dienoyl-CoA reductase -
  H5405_RS12185 (H5405_12185) - 2552567..2553430 (+) 864 WP_007611096.1 metallophosphoesterase -
  H5405_RS12190 (H5405_12190) - 2553505..2553999 (+) 495 WP_087920795.1 L,D-transpeptidase family protein -
  H5405_RS12195 (H5405_12195) - 2554075..2555367 (+) 1293 WP_007611093.1 MFS transporter -
  H5405_RS12200 (H5405_12200) kre 2555490..2555954 (+) 465 WP_003154622.1 YkyB family protein Regulator
  H5405_RS12205 (H5405_12205) cheV 2555997..2556908 (-) 912 WP_007611092.1 chemotaxis protein CheV -
  H5405_RS12210 (H5405_12210) - 2557097..2557258 (+) 162 WP_007409608.1 hypothetical protein -
  H5405_RS12215 (H5405_12215) - 2557459..2558672 (+) 1214 Protein_2427 aminotransferase A -
  H5405_RS12220 (H5405_12220) - 2558653..2560473 (-) 1821 WP_029325882.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=473809 H5405_RS12200 WP_003154622.1 2555490..2555954(+) (kre) [Bacillus velezensis strain HAB-2]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=473809 H5405_RS12200 WP_003154622.1 2555490..2555954(+) (kre) [Bacillus velezensis strain HAB-2]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929