Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   H5405_RS12100 Genome accession   NZ_CP060085
Coordinates   2539499..2540095 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2534499..2545095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS12075 (H5405_12075) mobB 2534872..2535393 (-) 522 WP_007611115.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  H5405_RS12080 (H5405_12080) glp 2535354..2536646 (-) 1293 WP_007611114.1 gephyrin-like molybdotransferase Glp -
  H5405_RS12085 (H5405_12085) - 2536664..2537683 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  H5405_RS12090 (H5405_12090) - 2537735..2538337 (-) 603 WP_007611112.1 molybdenum cofactor guanylyltransferase -
  H5405_RS12095 (H5405_12095) - 2538483..2539475 (+) 993 WP_007409627.1 hypothetical protein -
  H5405_RS12100 (H5405_12100) rok 2539499..2540095 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  H5405_RS12105 (H5405_12105) - 2540547..2541005 (-) 459 WP_007611110.1 TlpA disulfide reductase family protein -
  H5405_RS12110 (H5405_12110) - 2541294..2542100 (+) 807 WP_007611108.1 mechanosensitive ion channel family protein -
  H5405_RS12115 (H5405_12115) - 2542134..2542379 (-) 246 WP_003154596.1 YkuS family protein -
  H5405_RS12120 (H5405_12120) - 2542440..2543564 (-) 1125 WP_029325884.1 N-acetyldiaminopimelate deacetylase -
  H5405_RS12125 (H5405_12125) dapD 2543635..2544345 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  H5405_RS12130 (H5405_12130) - 2544427..2544882 (-) 456 WP_007409622.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=473808 H5405_RS12100 WP_003154591.1 2539499..2540095(-) (rok) [Bacillus velezensis strain HAB-2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=473808 H5405_RS12100 WP_003154591.1 2539499..2540095(-) (rok) [Bacillus velezensis strain HAB-2]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAGAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843