Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H5405_RS11990 Genome accession   NZ_CP060085
Coordinates   2519306..2519590 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514306..2524590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS11970 (H5405_11970) ade 2514412..2516145 (-) 1734 WP_007611150.1 adenine deaminase -
  H5405_RS11975 (H5405_11975) ktrC 2516294..2516959 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  H5405_RS11980 (H5405_11980) - 2517000..2517827 (-) 828 WP_007611149.1 gamma-glutamylcyclotransferase -
  H5405_RS11985 (H5405_11985) - 2517829..2519133 (-) 1305 WP_029325885.1 ATP-binding protein -
  H5405_RS11990 (H5405_11990) abrB 2519306..2519590 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H5405_RS11995 (H5405_11995) mreBH 2519862..2520869 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  H5405_RS12000 (H5405_12000) - 2520941..2521075 (+) 135 WP_003154559.1 protein YkpC -
  H5405_RS12005 (H5405_12005) - 2521176..2522408 (+) 1233 WP_007611144.1 aminopeptidase -
  H5405_RS12010 (H5405_12010) - 2522439..2523347 (-) 909 WP_007611143.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=473807 H5405_RS11990 WP_003154557.1 2519306..2519590(-) (abrB) [Bacillus velezensis strain HAB-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=473807 H5405_RS11990 WP_003154557.1 2519306..2519590(-) (abrB) [Bacillus velezensis strain HAB-2]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543