Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H5405_RS11125 Genome accession   NZ_CP060085
Coordinates   2302293..2303192 (-) Length   299 a.a.
NCBI ID   WP_029325906.1    Uniprot ID   -
Organism   Bacillus velezensis strain HAB-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2297293..2308192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS11110 (H5405_11110) xerC 2297677..2298594 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  H5405_RS11115 (H5405_11115) trmFO 2298664..2299971 (-) 1308 WP_007611407.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H5405_RS11120 (H5405_11120) topA 2300036..2302111 (-) 2076 WP_029325907.1 type I DNA topoisomerase -
  H5405_RS11125 (H5405_11125) dprA 2302293..2303192 (-) 900 WP_029325906.1 DNA-processing protein DprA Machinery gene
  H5405_RS11130 (H5405_11130) sucD 2303258..2304160 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  H5405_RS11135 (H5405_11135) sucC 2304189..2305346 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  H5405_RS11140 (H5405_11140) - 2305521..2305802 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  H5405_RS11145 (H5405_11145) - 2305799..2307502 (-) 1704 WP_007611400.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.07 Da        Isoelectric Point: 8.4593

>NTDB_id=473806 H5405_RS11125 WP_029325906.1 2302293..2303192(-) (dprA) [Bacillus velezensis strain HAB-2]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=473806 H5405_RS11125 WP_029325906.1 2302293..2303192(-) (dprA) [Bacillus velezensis strain HAB-2]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGTTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368