Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H5405_RS10570 Genome accession   NZ_CP060085
Coordinates   2127568..2128002 (-) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain HAB-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2122568..2133002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS10535 (H5405_10535) - 2122591..2122944 (+) 354 WP_007410379.1 multidrug efflux SMR transporter -
  H5405_RS10540 (H5405_10540) - 2122958..2123410 (-) 453 WP_003154075.1 OsmC family protein -
  H5405_RS10545 (H5405_10545) - 2123470..2124177 (-) 708 WP_007611586.1 poly-gamma-glutamate hydrolase family protein -
  H5405_RS10550 (H5405_10550) - 2124433..2124666 (-) 234 WP_007611582.1 hypothetical protein -
  H5405_RS10555 (H5405_10555) - 2124845..2126173 (+) 1329 WP_007611580.1 S8 family peptidase -
  H5405_RS10560 (H5405_10560) - 2126357..2126719 (+) 363 WP_007410383.1 hypothetical protein -
  H5405_RS10565 (H5405_10565) - 2126753..2127508 (-) 756 WP_003154084.1 YoaK family protein -
  H5405_RS10570 (H5405_10570) nucA/comI 2127568..2128002 (-) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  H5405_RS10575 (H5405_10575) - 2128291..2129502 (+) 1212 WP_007611575.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=473802 H5405_RS10570 WP_007611576.1 2127568..2128002(-) (nucA/comI) [Bacillus velezensis strain HAB-2]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=473802 H5405_RS10570 WP_007611576.1 2127568..2128002(-) (nucA/comI) [Bacillus velezensis strain HAB-2]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATAGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486